Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq17 203 3e-47 seq434 176 4e-39 seq278 176 4e-39 seq12 96.9 3e-15 seq33 89.7 4e-13 >seq17 Length=2641889 Score = 203 bits (224), Expect = 3e-47 Identities = 139/157 (89%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 34487 AAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGA 34546 || |||| || | |||||||||||||| | || ||||||||||||||||| ||||||| Sbjct 2106090 AAGTGGCAGGTCTGCCAAGCGCCTTGGCCACCTCAGGCATGTTGACGATGACGGTCTTGA 2106031 Query 34547 TGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACG 34606 ||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||| | Sbjct 2106030 TGCCGTTGCCCTTGCCTTCGACCTTGGCACAGATGCGCGGCATCTTGTACCGGTAGAAGG 2105971 Query 34607 CGTCCGCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 ||||||||||||||||||| |||||||| | |||||| Sbjct 2105970 CGTCCGCCACATTGCGGTTGACGTTCACCGACCCCAT 2105934 Score = 167 bits (184), Expect = 2e-36 Identities = 137/167 (82%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 34201 GCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGA 34260 || |||||||| || || ||||||||||||||||| || ||||| || |||||||| Sbjct 2106846 GCGGGCGGGTTCTTGAGGATGAAGGTGTTGAGCTTGTGGTTGAAGTCCAGGGTGCCGTGG 2106787 Query 34261 TAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCA 34320 || ||||| || ||||||||||| |||| |||| || | ||||||||| ||||| Sbjct 2106786 TAGCCGCAGGCCTTGCAGCCCTGCGAGATGGTGTTGCGCTTCGTGGACACGATCAGCTCC 2106727 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAA 34367 |||||||||||||| || |||||||||||||| |||||||||||||| Sbjct 2106726 GTCTCCGGGTTGTCGCACTCCGGACACAACACGAACTTGCGGATGAA 2106680 Score = 140 bits (154), Expect = 3e-28 Identities = 126/160 (79%), Gaps = 9/160 (6%) Strand=Plus/Minus Query 33619 CAcagcgcggtgagcgcg---------gcccgctgcgcgcgcagatcgccgcgcgtaaac 33669 |||||||||||||||||| || ||||| |||||| | ||| ||||||| | Sbjct 2108835 CACAGCGCGGTGAGCGCGTGCAGCACGGCGCGCTGGGCGCGCGGGTCGGCGCGCGTGCAG 2108776 Query 33670 tgcagcagcagcgcgcggtacttgcgcACGTCCCCGGCGAACGCCGCCGGCCTCACCAGC 33729 |||||||||||||||||| |||||||| | || | ||| |||||| ||||||| Sbjct 2108775 CGCAGCAGCAGCGCGCGGTGGCGCCGCACGTCGGCCGCCAGCGCGCCCGGCCGCACCAGC 2108716 Query 33730 ACCTCGAACAGCACCAGCGGCGCCTTCGACTTCACCTCCA 33769 ||||| | || ||||||||||||||||||||||||||||| Sbjct 2108715 ACCTCCAGCATCACCAGCGGCGCCTTCGACTTCACCTCCA 2108676 Score = 113 bits (124), Expect = 4e-20 Identities = 116/149 (78%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 33427 TCCTCGGCCTGCTGCAGCCAGTCCAGGAAGGGCTGCGCGCGGCGCCGCACGTCCGCCATC 33486 |||||||| ||||||||||| || ||||||||| || || ||||||||||| || ||| Sbjct 2109579 TCCTCGGCGTGCTGCAGCCACTCGAGGAAGGGCGCAGCACGACGCCGCACGTCGGCGATC 2109520 Query 33487 TCCTCGCGGCTTAGCG-CTTTGCGGGACGGCTTGTAAAACCACTCCACGATCGCTTTCTT 33545 |||| || | ||| ||||| ||||||||| ||||||||| |||||| |||| Sbjct 2109519 ACCTCCTTGC-TGGCGTACTTGCGCGACGGCTTGGCCGACCACTCCAGGATCGCCTTCTC 2109461 Query 33546 TTCCACCACGTTCAAGTCGTACAGCAGCT 33574 ||||| | || | |||||||||||||| Sbjct 2109460 CTCCACGATGTCCTCGTCGTACAGCAGCT 2109432 Score = 102 bits (112), Expect = 7e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 34369 CCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCG 34428 || || ||||||||||| | ||| ||||||| ||| |||||| |||||||| || ||| Sbjct 2106452 CCGTCCAGCAGGTCCTGCAGCTTGGCGGAGTCATGGCTGCCGTTCACGATGAACCGCTCG 2106393 Query 34429 TTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || ||| | || | |||||| |||||||| | |||||| |||||||| || || || Sbjct 2106392 TTCTTGAAGTCAAACTGCGTCTGCGCGCCTAACTCGCAACCGAAGTATTTCGTAGG 2106337 >seq434 Length=190249 Score = 176 bits (194), Expect = 4e-39 Identities = 643/989 (65%), Gaps = 26/989 (3%) Strand=Plus/Minus Query 28715 AGTTGCAGATACGGACGGTGGGCATTTGTCTCCGCTGGAGTACGTTTGGCGG-GAAAATA 28773 |||||| ||||| || ||| | || ||| | || |||| ||| | | ||| || | | Sbjct 114910 AGTTGCCGATACTGATGGTAGCCACTTGCCACCCTTGGACTAC-TCTATCGGAGAGAGGA 114852 Query 28774 ACAAACCTG----GCCGACGCCAGGACAAGACCGTCGCTGCGTATTTTGTGGAATGGAGC 28829 |||| ||| || ||| | || |||| || | || || || || |||||| || Sbjct 114851 ACAAGCCTTTCAAGCAGACTTCTGG-CAAGGTTGTTGGCGCTTACTTCGTCGAATGGGGC 114793 Query 28830 GTGTACGGCCGCAACTTTTCGGTGGACAAGGTGCCGCTGCCCAACCTCTCGCATCTGTTA 28889 || ||| | | || || | || ||| || || | || || || | ||||| | Sbjct 114792 GTCTACCCCAGGAAGTTCCCCGTCGACCGCGTACCCATCCCGAATCTTACCCATCTTCTG 114733 Query 28890 TACGGCTTCGTACCTATTTGCGGCGGCGACGGGCTCAACGACGCCCTTAAAACCATACCC 28949 ||||| ||| | || || ||||| || || || |||||||| | ||| || Sbjct 114732 TACGGTTTCATCCCAATCTGCGGTGGAGATGGCATCAACGACAGTTTGAAAGAAATCGAA 114673 Query 28950 GGTAGTTTTGAAGCGCTGCAACGTTCGTGCAACGGCCGTTCAGATTTTAAAGTTGCTATT 29009 || ||||| |||| |||||||| || |||| |||| | ||| || ||||| | || Sbjct 114672 GGCAGTTTCCAAGCTCTGCAACGATCCTGCAGCGGCAGGGAAGACTTCAAAGTATCGATC 114613 Query 29010 CACGATCCTTGGGCCGCAATACAAAAACCGCAAAAGGGCGTGTCTGCGTGGAACGAGCCC 29069 ||||| |||||||| || | || ||||| |||||||| || | | ||||| || ||| Sbjct 114612 CACGACCCTTGGGCAGCTCTTCAGAAACCACAAAAGGGTTTGGCGTCCTGGAATGAACCC 114553 Query 29070 TACAAAGGCAATTTCGGTCAGCTCATG--GCTGCCAAGTTGGCCAATCCACACATCAAAA 29127 ||||| || || ||||| ||||| ||| | || || ||| | || || | || | Sbjct 114552 TACAAGGGTAACTTCGGCCAGCTGATGATGTTG--AAACAGGCAAGACCTGACCTGAAGA 114495 Query 29128 TTCTACCGTCCATAGGCGGCTGGACATTGTCCGACCCTTTTTATTTTATGCAC-GACGCG 29186 | |||| ||| | || |||||||| ||| | || || || | | || | ||| ||| | Sbjct 114494 TCTTACCTTCCGTTGGTGGCTGGACCTTGGCTGATCCATTCT-TCTTCTTCACTGACAAG 114436 Query 29187 GAGAAACGGC-GCGTGTTTGTGGACTCGGTCGAGGAATTTTTGCAGGTGTGGAAATTTTT 29245 | || || ||| || || ||||| || |||| || | | |||||||| || Sbjct 114435 GTTAAGAGGAAGCGC-TTCGTCGACTCTGTTAAGGACTTCCTTGAAACCTGGAAATTCTT 114377 Query 29246 TGACGGCGTAGACATTGACTGGGAATTTCCGGGCGGTAAAGGCGCTAACCCGACACTTGG 29305 ||||| || ||||| |||||||| || || || ||||| ||||||||||| || || Sbjct 114376 CGACGGAGTGGACATCGACTGGGAGTTCCCTGGTGGTAAGGGCGCTAACCCTGATCTCGG 114317 Query 29306 CAACGGGGAGCGCGACGCCGACACGTATAACATTTTACTGAAGGAATTGCGCGCAATGCT 29365 | | || ||||| ||| || | | |||||||| || | | ||||| Sbjct 114316 TAGCCCTGA---CGACGGTCACATCTACGTCGAGCTGATGAAGGAACTGAGAGAGATGCT 114260 Query 29366 GGATAAACTGCAATTGCAA-ACGGGTAAAACGTATGAATTGACAAGCGCAATCAGCTCTG 29424 | | ||| | ||| || || || | || ||| |||| || |||||||||| Sbjct 114259 CAACGAGCTG-TCTGCCAAGACAGGCAAGAAATACGAACTGACTTCAGCCATCAGCTCTG 114201 Query 29425 GCCACGACAAAATTGCTGTAGTGAAATACGACGTTGTGCAAAAATTTCTTGATAAAATAT 29484 | ||||| ||| || || | ||| | | | ||| | | | ||| | || | Sbjct 114200 GTTGGGACAAGATTCAGGTGGTAGACTACAAGGCGGCTCAACAGTACATGGATCACATCT 114141 Query 29485 TTCTAATGAGTTACGATTTTAAAGGCGCATGGTCAAACACCGATTTGGGATATCAAACTA 29544 | | ||||| || || || || || || ||||||||| | | | || | ||| || Sbjct 114140 TCTTGATGAGCTATGACTTCAAGGGAGCTTGGTCAAACGACACTCTTGGCCACCAAGCTG 114081 Query 29545 CACTCTACGCACCGAGTTGGAATCCCAACGAGCTTTACAACACTGACCACGCCGT-AAAG 29603 | || |||| || ||||| ||||| ||| ||||| |||||| || || ||| Sbjct 114080 CTCTGCACGCTCCCGCATGGAACCCCAAGGAGACTTACACAACTGACTTCGGTGTCAAAT 114021 Query 29604 TC--GCTCACTAACCAAGGCGTGGACCCGCGCAAAATTATTGTGGGCGTCGCCATGTACG 29661 || | | || || || || || || || | || || || || ||||||| Sbjct 114020 TCCTGTTGGCT---CAGGGAGTCAGTCCTAAGAAGATCGTCGTTGGTGTTGCTATGTACG 113964 Query 29662 GCCGCGGTTGGACGGGCGTGACCGGTTAC 29690 |||| |||||||| || || | ||||||| Sbjct 113963 GCCGTGGTTGGACTGGAGTCAACGGTTAC 113935 >seq278 Length=307000 Score = 176 bits (194), Expect = 4e-39 Identities = 195/260 (75%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 103670 GAAGCTGCGCGTTTGCGCACTTTTACCGCGTGGCCGCGCGGTTTGAAGCAACATCCCGAG 103729 ||||||||||||||||||| ||||| | |||||||| | || |||| | || ||| Sbjct 239043 GAAGCTGCGCGTTTGCGCAGTTTTAAAGACTGGCCGCGATGCATGCGGCAAAAACCAGAG 238984 Query 103730 ATACTTGCCGAAGCTGGTTTCTTTTACACCGGCAAAAGCGACAAAGTCAAATGCTTTTAC 103789 ||||||||||||||||||||| |||||||| | | || || ||| || || || Sbjct 238983 GAACTTGCCGAAGCTGGTTTCTTCTACACCGGTCAGGGGGATAAGACCAAGTGTTTCTAT 238924 Query 103790 TGCAACGGCGGTCTGAACAATTGGGAGCAAGATGACGACCCGTGGCAACAACACGCGCTT 103849 ||| | |||||| |||| | ||||| | ||||||| || ||| |||| ||||||| Sbjct 238923 TGCGATGGCGGTTTGAAAGACTGGGAAAATGATGACGTGCCCTGGGAACAGCACGCGCGC 238864 Query 103850 TGGTTCGGACGCTGCGCATACGTGCTACTTGTCAAAGGCCACGATTATGTACAAAAGGTC 103909 ||||||| |||||||| ||||||| || || || |||| ||| || ||||| ||||| Sbjct 238863 TGGTTCGACCGCTGCGCCTACGTGCAGCTGGTGAAGGGCCGCGAGTACGTACAGAAGGTG 238804 Query 103910 GTGACCGAATCGTGCGTAGT 103929 || |||| | ||||| || Sbjct 238803 ATGTCCGAGGCCTGCGTGGT 238784 >seq12 Length=2918994 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| ||||| |||||||| || ||||| | || |||||| Sbjct 2850199 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATTACATTGGAGGTCGAGCCTTCG 2850140 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| || ||| |||||||| || | || || ||| Sbjct 2850139 GACACGATCGAAAATGTCAAAGCCAAAATTCAAGACAAAGAGGGAATTCCACCAGACCAA 2850080 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | || || || || ||||||||| ||||| || | |||||||| Sbjct 2850079 CAGAGATTGATCTTCGCCGGCAAGCAATTGGAGGATGGACGAACATTGTCTGATTACAAT 2850020 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 ||||| || |||||||||||||| Sbjct 2850019 ATTCAGAAGGAATCTACGTTGCA 2849997 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||| ||||| || || || ||||| || || | ||| ||||| Sbjct 2423061 AATGCAGATTTTTGTGAAAACCTTGACGGGTAAAACTATCACTCTTGAAGTTGAGCCATC 2423120 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| ||| | | | |||||| || ||| |||||||||||| | ||| ||||| Sbjct 2423121 CGACACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGATCA 2423180 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || |||| || | || || || ||| | || || | | ||| || | || ||||| Sbjct 2423181 GCAGCGACTGATCTTCGCTGGAAAGCAGTTAGAAGACGGTCGCACACTGTCTGACTACAA 2423240 Query 110452 CATTCAAAAAGAATCTACGTTGCAC 110476 ||| ||||||||||||||| | ||| Sbjct 2423241 CATCCAAAAAGAATCTACGCTCCAC 2423265 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||| | || || || || |||||| ||||| |||||| Sbjct 2423290 ATGCAGATTTTCGTTAAAACGCTTACTGGTAAGACAATTACCCTCGAAGTCGAGCCTTCA 2423349 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | || || || ||| ||||||||||| | || || || Sbjct 2423350 GATACTATCGAGAATGTTAAGGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGACCAG 2423409 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| | || | ||| || || |||||||| |||| | || | | || |||||| Sbjct 2423410 CAAAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAAC 2423469 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| ||||| || | ||| |||| | | |||||||| || Sbjct 2423470 ATTCAAAAGGAATCCACCCTTCACCTGGTCCTGCGTCTGCGAGGTGG 2423516 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || || || || |||||||| ||| | ||| |||||| Sbjct 2424658 ATGCAGATTTTCGTAAAGACCTTGACTGGAAAAACCATCACCCTAGAAGTTGAGCCTTCT 2424717 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || || ||||| ||||| ||||| | ||| || || Sbjct 2424718 GATACCATCGAAAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 2424777 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | ||||| | ||| || || ||||| || |||| |||| | | |||||||| Sbjct 2424778 CAGCGTCTTATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTTTCTGATTACAAT 2424837 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || ||||||||||| | ||| |||| || | |||||||| || Sbjct 2424838 ATCCAGAAAGAATCTACCCTTCACTTGGTCTTGCGTCTGCGAGGTGG 2424884 >seq33 Length=1899332 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||| | || || || ||||| ||| |||| |||| || Sbjct 106351 ATGCAAATCTTCGTAAAAACCCTGACGGGTAAGACCATCACCCTCGAGGTGGAGGCTTCA 106292 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | || || |||||| |||||||| ||| | || || || Sbjct 106291 GAGACTATTGAGAATGTGAAGGCAAAGATTCAGGACAAAGAGGGCATTCCGCCAGACCAG 106232 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||| | || ||||||||| |||| |||| | | ||| | | | |||||| Sbjct 106231 CAACGTCTTATATTCGCCGGTAAACAGTTGGAAGATGGCCGCACACTCACAAACTACAAC 106172 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| || ||||| || || ||| ||||| | || | | ||| |||| Sbjct 106171 ATTCAGAAGGAATCCACATTCCACTTGGTGCTCAGGCAGACAGGAGGAA 106123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412836583587521