Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq296 116 6e-20 seq416 89.7 8e-12 seq602 86.0 1e-10 seq396 86.0 1e-10 seq14 86.0 1e-10 >seq296 Length=269947 Score = 116 bits (128), Expect = 6e-20 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 2019195 CTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCG 2019254 |||||| | || || |||||| || | ||||| || ||||| ||| || | ||| || Sbjct 54953 CTGCCGGCGGGGCGGCACAAGCTGGTGATCCTGGACGAGGCGGACAGCATGACGGAGGGC 55012 Query 2019255 GCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTG 2019314 || |||||||| || || |||||||| |||| | |||| ||||| || ||||| Sbjct 55013 GCGCAGCAGGCGCTGCGCCGCACCATGGAGCTGTACTCGCACACCACGCGCTTCGCGCTC 55072 Query 2019315 GCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGC 2019374 ||| ||||| || || | ||||||| || ||||| || |||||| | ||||| Sbjct 55073 GCCGCCAACAACTCCGAGAAGATCATCGAGCCCATCCAGTCGCGCTGCGCCGTGCTGCGC 55132 Query 2019375 TTTGCGCGCCTCACCGACGCCCAGATC 2019401 | |||||||||||||||| |||||| Sbjct 55133 TACTCGCGCCTCACCGACGCGCAGATC 55159 Score = 109 bits (120), Expect = 9e-18 Identities = 183/264 (69%), Gaps = 18/264 (7%) Strand=Plus/Plus Query 2018916 CCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCACGCC 2018975 || ||||| ||||| ||||| |||| ||| || ||||||||||||||||| || | Sbjct 53674 CCATGGATAGAAAAATACCGGCCGATAGTATTCAGTGACATCGTGGGCAACGAAGACACG 53733 Query 2018976 GTTGCCTACCTCAAGGCGCTGGC--------CGCCGAC-GGCAACATGCCCAACCTCTTG 2019026 || ||| |||| |||| ||| || || ||| || ||| | | Sbjct 53734 GT-------CTCTAGGC--TGGCAGTGTTTGCGCGCACCGGGAACGCTCCTAACATAATA 53784 Query 2019027 CTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTC 2019086 | ||||| || || ||| |||||||| || | |||| |||||||||||||| ||| Sbjct 53785 ATCGCGGGTCCTCCGGGCGTCGGCAAGACTACCACCATCCTGTGCCTGGCGCGCGCGCTG 53844 Query 2019087 TTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTG 2019146 | || || ||| | ||| ||||||||||| ||||| ||||| |||| |||||| | Sbjct 53845 CTCGGGGCCGCCTTCCGCGACGCCGTGCTCGAGCTCAACGCGTCCAACGACCGCGGCATC 53904 Query 2019147 GACGTCGTGCGTAGAATCATCAAG 2019170 || |||||||| | | |||||| Sbjct 53905 GATGTCGTGCGCAACAAGATCAAG 53928 >seq416 Length=155529 Score = 89.7 bits (98), Expect = 8e-12 Identities = 129/181 (71%), Gaps = 7/181 (4%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | ||||||||||| | ||||||||| | |||||||| ||||| || Sbjct 138879 CCAGGCATCAATCCGCGCTTCTTCATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAAT 138820 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT-- 794497 ||||| || || || |||||| | | || ||||| ||||| || ||| ||| Sbjct 138819 ATGCCTTCAACTGCAGCAAAGGCAATGATACGCTCAGCAAATGT-----GGCTGACTTGC 138765 Query 794498 TGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGG 794557 || |||||||||| ||||| || ||||| ||| |||| |||||| || || || | Sbjct 138764 TGGCAATCCACTTCAGGGCCCAGTCAGCCTTCTTCTTCACACAGGGCAGGGTTTCAATAG 138705 Query 794558 C 794558 | Sbjct 138704 C 138704 >seq602 Length=84025 Score = 86.0 bits (94), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 1812784 GCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGATC 1812843 |||||||||||||||| ||| ||||| | || ||||| | ||||||||||||||||| Sbjct 15496 GCCTCGGTGGCGCAGTAGGCAGCGCGTAAGTCTCATAATCTTAAGGTCGTGAGTTCGATC 15437 Query 1812844 CTCACCCGAGGTATATC 1812860 |||||||| || ||||| Sbjct 15436 CTCACCCGGGGCATATC 15420 >seq396 Length=252760 Score = 86.0 bits (94), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 1812784 GCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGATC 1812843 |||||||||||||||| ||| ||||| | || ||||| | ||||||||||||||||| Sbjct 103954 GCCTCGGTGGCGCAGTAGGCAGCGCGTAAGTCTCATAATCTTAAGGTCGTGAGTTCGATC 103895 Query 1812844 CTCACCCGAGGTATATC 1812860 |||||||| || ||||| Sbjct 103894 CTCACCCGGGGCATATC 103878 >seq14 Length=2788665 Score = 86.0 bits (94), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1812784 GCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGATC 1812843 |||||||||||||||| ||| ||||| | || ||||| | ||||||||||||||||| Sbjct 2318797 GCCTCGGTGGCGCAGTAGGCAGCGCGTAAGTCTCATAATCTTAAGGTCGTGAGTTCGATC 2318856 Query 1812844 CTCACCCGAGGTATATC 1812860 |||||||| || ||||| Sbjct 2318857 CTCACCCGGGGCATATC 2318873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916140344562683