Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq434 224 8e-54 seq12 91.5 1e-13 seq33 89.7 4e-13 >seq434 Length=190249 Score = 224 bits (248), Expect = 8e-54 Identities = 642/974 (66%), Gaps = 16/974 (2%) Strand=Plus/Minus Query 28979 AGTTGCGGACACGGACGGTGGCCATTTGTCTCCGCTGGAATACGTTTGGCGG-GAGAATA 29037 |||||| || || || ||| |||| ||| | || |||| ||| | | ||| |||| | Sbjct 114910 AGTTGCCGATACTGATGGTAGCCACTTGCCACCCTTGGACTAC-TCTATCGGAGAGAGGA 114852 Query 29038 ACAAGCCTG----GACGGCGCCAGGACAAGACCGTCGCTGCGTATTTTGTAGAATGGGGC 29093 |||||||| | | | | || |||| || | || || || || ||||||||| Sbjct 114851 ACAAGCCTTTCAAGCAGACTTCTGG-CAAGGTTGTTGGCGCTTACTTCGTCGAATGGGGC 114793 Query 29094 GTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCTGCCCAACCTCTCGCATCTGTTG 29153 || || | | || || || || ||| || || | || || || | ||||| || Sbjct 114792 GTCTACCCCAGGAAGTTCCCCGTCGACCGCGTACCCATCCCGAATCTTACCCATCTTCTG 114733 Query 29154 TACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAACGACGCCCTCAAAACCATTCCC 29213 ||||||||||| || || ||||| || || || |||||||| | ||| || Sbjct 114732 TACGGTTTCATCCCAATCTGCGGTGGAGATGGCATCAACGACAGTTTGAAAGAAATCGAA 114673 Query 29214 GGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCGTTCAGATTTCAAAGTCGCTATT 29273 |||||||| | || |||||||| || |||| ||| | ||| |||||||| | || Sbjct 114672 GGCAGTTTCCAAGCTCTGCAACGATCCTGCAGCGGCAGGGAAGACTTCAAAGTATCGATC 114613 Query 29274 CACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGGCGTGTCTGCGTGGAACGAGCCC 29333 ||||| || ||||| || | || ||||| |||||||| || | | ||||| || ||| Sbjct 114612 CACGACCCTTGGGCAGCTCTTCAGAAACCACAAAAGGGTTTGGCGTCCTGGAATGAACCC 114553 Query 29334 TACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCTGGCCAATCCGCACCTCAAAATT 29393 ||||| || |||||||| ||||| ||| | || | ||| | || |||| || || Sbjct 114552 TACAAGGGTAACTTCGGCCAGCTGATGATGTTGAAACAGGCAAGACCTGACCTGAAGATC 114493 Query 29394 CTGCCGTCCATCGGCGGCTGGACATTGTCCGACCCGTTCTATTTCATGCAC-GACGCGGA 29452 | || ||| | || |||||||| ||| | || || |||| ||| | ||| ||| || Sbjct 114492 TTACCTTCCGTTGGTGGCTGGACCTTGGCTGATCCATTCTTCTTCTT-CACTGACAAGGT 114434 Query 29453 AAAACGGCGTGTGTTTGTGGACTCGGTCAGAGAATTTCTGCAGGTGTGGAAGTTTTTTGA 29512 || || || || ||||| || | || || || | ||||| || || || Sbjct 114433 TAAGAGGAAGCGCTTCGTCGACTCTGTTAAGGACTTCCTTGAAACCTGGAAATTCTTCGA 114374 Query 29513 CGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCAAAGGCGCCAACCCGACACTTGGCAA 29572 ||| |||||||| ||||||||||| || ||||| || ||||| ||||| || || | Sbjct 114373 CGGAGTGGACATCGACTGGGAGTTCCCTGGTGGTAAGGGCGCTAACCCTGATCTCGGTAG 114314 Query 29573 CGGGGAGCGCGACGCCGACACGTATAACATTTTACTAAAGGAATTGCGCGCAATGATGGA 29632 | || ||||| ||| || | | | |||||| || | | ||| | | Sbjct 114313 CCCTGA---CGACGGTCACATCTACGTCGAGCTGATGAAGGAACTGAGAGAGATGCTCAA 114257 Query 29633 CGAGTTACAATTGCAA-ACGGGCAAAACGTACGAGTTGACAAGCGCAATCAGTTCCGGAC 29691 |||| | | ||| || ||||| | ||||| |||| || ||||| || || Sbjct 114256 CGAGCT-GTCTGCCAAGACAGGCAAGAAATACGAACTGACTTCAGCCATCAGCTCTGGTT 114198 Query 29692 ATGACAAGATTGCTGTAGTTAAATACGACGCTGCGCAAAAGTTTCTCGATAAAATATTCC 29751 ||||||||| || || | ||| | || || ||| ||| | ||| | || ||| Sbjct 114197 GGGACAAGATTCAGGTGGTAGACTACAAGGCGGCTCAACAGTACATGGATCACATCTTCT 114138 Query 29752 TCATGAGCTACGATTTTAAAGGCGCGTGGTCAAACACCGATTTGGGCTACCAAACTACTC 29811 | |||||||| || || || || || ||||||||| | | | ||| ||||| || ||| Sbjct 114137 TGATGAGCTATGACTTCAAGGGAGCTTGGTCAAACGACACTCTTGGCCACCAAGCTGCTC 114078 Query 29812 TCTACGCGCCGAGTTGGAACCCAAACGA-ACTGTACAACACGGACCACGCCGTTAAGTTG 29870 | |||| || |||||||| || || ||| |||| || ||| || || || || Sbjct 114077 TGCACGCTCCCGCATGGAACCCCAAGGAGACT-TACACAACTGACTTCGGTGTCAAATTC 114019 Query 29871 CTCACGAACCAGGGCGTGGACCCGCGCAAAATTATTGTGGGCGTCGCCATGTACGGCCGC 29930 || | ||||| || || || || | || || || || ||||||||||| Sbjct 114018 CTGTTGGCTCAGGGAGTCAGTCCTAAGAAGATCGTCGTTGGTGTTGCTATGTACGGCCGT 113959 Query 29931 GGTTGGACAGGCGT 29944 |||||||| || || Sbjct 113958 GGTTGGACTGGAGT 113945 >seq12 Length=2918994 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| |||||||| ||||| || || || ||||| || || | ||| ||| | Sbjct 2423061 AATGCAGATTTTTGTGAAAACCTTGACGGGTAAAACTATCACTCTTGAAGTTGAGCCATC 2423120 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| | | | |||||| || ||| || ||||||||| | ||| ||||| Sbjct 2423121 CGACACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGATCA 2423180 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| |||| || | || || || ||| | || |||| ||| || | |||||||| Sbjct 2423181 GCAGCGACTGATCTTCGCTGGAAAGCAGTTAGAAGACGGTCGCACACTGTCTGACTACAA 2423240 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 ||| ||||| || |||||| | ||| Sbjct 2423241 CATCCAAAAAGAATCTACGCTCCAC 2423265 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| || || || || || || |||||||| ||| | ||| ||| || Sbjct 2423974 ATGCAGATTTTCGTGAAGACATTGACTGGAAAAACCATCACCCTAGAAGTTGAGCCTTCT 2424033 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| ||| | || || ||||| || || || || | ||| || ||| Sbjct 2424034 GATACTATCGAAAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 2424093 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | || || || |||||||| || | || | | ||||||||| Sbjct 2424094 CAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCCGACTACAAC 2424153 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || |||||||| ||||| |||| ||| | |||||||| || Sbjct 2424154 ATTCAGAAAGAGTCTACTTTGCATTTGGTTTTGCGTTTGCGAGGTGG 2424200 >seq33 Length=1899332 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 107547 AGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACG 107606 |||| || |||||||| || || ||||| | || || || ||||| ||| |||| | Sbjct 106360 AGGTATACCATGCAAATCTTCGTAAAAACCCTGACGGGTAAGACCATCACCCTCGAGGTG 106301 Query 107607 GAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCC 107666 |||||| || ||| | | | || || ||||||| || ||||| ||| | || Sbjct 106300 GAGGCTTCAGAGACTATTGAGAATGTGAAGGCAAAGATTCAGGACAAAGAGGGCATTCCG 106241 Query 107667 GTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCG 107726 || ||||| | ||||| | || ||||||||| |||| || | | ||| | | Sbjct 106240 CCAGACCAGCAACGTCTTATATTCGCCGGTAAACAGTTGGAAGATGGCCGCACACTCACA 106181 Query 107727 GACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||||||||| ||||| || || || ||| ||||| Sbjct 106180 AACTACAACATTCAGAAGGAATCCACATTCCACTTGGTG 106142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 107552 TAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGC 107611 || ||||||||| || || ||||| | || || || ||||| ||| |||| |||||| Sbjct 100127 TACAATGCAAATCTTCGTAAAAACCCTGACGGGTAAGACCATCACCCTCGAGGTGGAGGC 100068 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 | || ||| | | | || || ||||||| || ||||| ||| | || || Sbjct 100067 TTCAGACACTATTGAGAATGTGAAGGCAAAGATTCAGGACAAAGAGGGCATCCCGCCAGA 100008 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 ||||| | ||||| | || ||||||||| |||| || | | ||| | | ||||| Sbjct 100007 CCAGCAACGTCTTATATTCGCCGGTAAACAGTTGGAAGATGGCCGCACACTCTCAGACTA 99948 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAA 107785 |||||| || ||||| || || | ||| | ||| | || || |||| || || Sbjct 99947 CAACATCCAGAAGGAATCCACACTCCACTTAGTGCTTAGGCTGAGAGGAGGTAA 99894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398871953272933