Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq33 210 5e-49 >seq33 Length=1899332 Score = 210 bits (232), Expect = 5e-49 Identities = 476/700 (68%), Gaps = 23/700 (3%) Strand=Plus/Plus Query 110469 CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTT 110528 ||||| | ||| || || || |||| |||| || |||||| |||| |||||| Sbjct 685280 CATGCAAGTCCAACTCTTTTCTCAGCAGCAACTCCACGACCACAATTATCTTCATGCTTT 685339 Query 110529 CTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCT 110588 ||| ||| ||| | |||||| ||||| || |||||||| | | ||| || ||| Sbjct 685340 CTTATAGCAATGAGGGATGATAGCATTGAGGGAATTTATGACACGTTAAAACAATGTGCC 685399 Query 110589 CTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGA 110648 || |||||||| |||| || || ||| |||| || || ||| | |||| ||| Sbjct 685400 CTCATTTCTAAGTCAGCTGGTGGGATAGGTCTTCATGTACACTGCATTAGAGCAAAGGGA 685459 Query 110649 GCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTC 110708 | |||| || | || |||| || | ||| || || || ||||||||||| | | Sbjct 685460 ACTTATATAGCTGGTACAAATGGTGTCTCTAATGGTCTAGTACCCATGTTAAGAGTGTAC 685519 Query 110709 AACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATC 110765 ||| ||||||| |||||| | ||||| || ||| ||| ||| ||||||| || Sbjct 685520 AACAACACTGCTCGATATGTAGACCAAGGAGGTAATAAAAGACCCGGCGCATTTGCCATA 685579 Query 110766 TATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAA-ATCA-AG 110823 || | ||||| |||||| | ||||||||||||||| | || || | |||| | || | Sbjct 685580 TACTTAGAACCATGGCATGCTGATATATTTGAATTCCTTGA--TTTGAAAAAGAACACTG 685637 Query 110824 GATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCA 110883 | |||||| | || | || |||| ||||| | ||||| | || || |||| Sbjct 685638 GGAAAGAAGAAGTCCGTGCCAGAGAGCTATTCTATGCTTTATGGATACCTGACTTGTTCA 685697 Query 110884 TGAAACGTGTTCAAGAAAATGGCATG--TGGTCTCTTATGTGTCCTCATCGTTCTCCTGG 110941 ||||| | || || ||| || | ||| | | ||||| || ||| | |||||| Sbjct 685698 TGAAAAGAGTAGAAAGCAAT--CAAGATTGGAGTATCATGTGCCCCCATGAATGTCCTGG 685755 Query 110942 TCTATCTGA-TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAG 111000 ||| | || ||| | || | || ||||||| | || || ||||||||||||| || Sbjct 685756 ACTAGCAGACTGT-TGGGGTGAGGAATTTGAAGCTTTGTATGAGAAATATGAAAAAG-AG 685813 Query 111001 GCAAGTTTCG-CAAACAAATTCCAGCTCAAGAACTTTGGTTCAAA---ATCCTTGAATCA 111056 | | |||| |||||| | |||||||| |||||| ||| || | ||| || Sbjct 685814 GGTCGCTTCGTGAAACAAGTGAGAGCTCAAGTTCTTTGG---AAAGCTATTATCGAAGCA 685870 Query 111057 CAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGA-TCATATTAATCGCAAATCTAA 111115 ||||||||||| |||||||| || || | |||||||| |||| ||| | ||| || Sbjct 685871 CAAGTTGAAACAGGAACTCCATACATGCTTTATAAAGATTCAT-GCAATAGAAAAAGCAA 685929 Query 111116 TCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 |||| ||| || || || ||||| | || || |||||| Sbjct 685930 CCAAAAGAACTTGGGTACTATTAAATGCAGCAACTTGTGC 685969 Score = 87.8 bits (96), Expect = 4e-12 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 112576 AAGTGACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAA 112635 |||| || || ||| || | || ||||||||||||||||| || |||||| Sbjct 686085 AAGTTACTAAGACTATAACTCAGAATCTAAATAAAATTATTGATGTAAATTATTATCCAG 686144 Query 112636 TTCAAAAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGAT 112695 | | | | |||||| | || |||| | ||| |||| || || ||||| || ||||||| Sbjct 686145 TGCCAGAGGCAAAAAACTCAAATATGAGGCACCGACCCATCGGAATTGGAGTCCAAGGAT 686204 Query 112696 TAGCTGATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATT--CTT 112753 ||||||||| |||| | | ||||| || |||| || ||| || |||| || Sbjct 686205 TAGCTGATGCATTTGTTTTAATGCGTATACCTTACGAAAGTGAGGCAGC--AATTAAATT 686262 Query 112754 AAATGAAAAGATTTTCGAAACAATCTATT 112782 |||| || | || || |||||||| |||| Sbjct 686263 AAATCAACAAATATTTGAAACAATTTATT 686291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186797639579117