Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq12 138 7e-28 seq33 109 4e-19 >seq12 Length=2918994 Score = 138 bits (152), Expect = 7e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | || || ||||||||| || ||||| || ||||||||||| Sbjct 2850200 ACCACCGCGCAGACGAAGTACTAAGTGTAGAGTGGATTCCTTTTGAATATTGTAATCGGA 2850259 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| |||| |||| ||||| ||||| || ||||| |||||||||||| | || Sbjct 2850260 AAGTGTGCGACCGTCTTCCAGCTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGTGG 2850319 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| ||||| | || ||||| || | |||||| | ||| | Sbjct 2850320 AATACCTTCCTTGTCCTGGATTTT-GGCTTTAACATTTTCAATAGTGTCGGAGGGTTCAA 2850378 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || || ||||| || ||||| |||||| Sbjct 2850379 CTTCTAGGGTGATAGTCTTGCCGGTCAAGGTTTTGACGAAGATTTGCATA 2850428 Score = 127 bits (140), Expect = 1e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| |||||||| || || |||||||| |||| || || || ||||| || || Sbjct 2423252 TCTTTTTGGATGTTGTAGTCAGACAGTGTGCGACCGTCTTCTAACTGCTTTCCAGCGAAG 2423193 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| |||||||||||| | || | ||||||||||| |||||| | || |||| Sbjct 2423192 ATCAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGAATTTT-GGCTTTTACATT 2423134 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | |||||| || || || |||| ||||| |||||||| || || ||||| || Sbjct 2423133 TTCAATAGTGTCGGATGGCTCAACTTCAAGAGTGATAGTTTTACCCGTCAAGGTTTTCAC 2423074 Query 33738 AAAGATCTGCAT 33749 ||| |||||||| Sbjct 2423073 AAAAATCTGCAT 2423062 Score = 127 bits (140), Expect = 1e-24 Identities = 171/234 (73%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | ||| | ||| ||||| ||| || || || ||||| ||||| Sbjct 2852922 ACCACCTCTGAGACGCAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGA 2852981 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| | || ||||||||||||||||| || ||||| | ||| ||||| | || Sbjct 2852982 AAGAGTGCGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGG 2853041 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || |||||| || || ||| | || | ||| || | ||||| Sbjct 2853042 AATGCCTTCCTTATCTTGAATTTT-TGCTTTAACGTTTTCAATGGTATCAGAGGGTTCCA 2853100 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 | || | || || ||||| || || || || || |||||||||||||| |||| Sbjct 2853101 CCTCTAATGTTATGGTTTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT-GTTG 2853153 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| || || ||||| | |||| ||| || || |||||||| || || Sbjct 2852010 ACCACCACGCAGACGCAAAACTAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGA 2852069 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| |||| || | || || ||||| || ||||| |||||||| ||| | || Sbjct 2852070 AAGTGTGCGACCGTCTTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGG 2852129 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||||| | || ||||| || | ||||| | || | Sbjct 2852130 AATTCCTTCTTTGTCTTGGATTTT-GGCTTTAACATTTTCGATTGTGTCTGAAGGCTCAA 2852188 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| ||||| || || || || ||||| |||||| Sbjct 2852189 CCTCTAGAGTGATGGTTTTGCCTGTCAAGGTCTTGACGAAGATTTGCATA 2852238 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| | |||| || || ||| || ||||| |||||||| || || Sbjct 2423517 ACCACCTCGCAGACGCAGGACCAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCAGA 2423458 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || |||| || || |||||||| ||||| | ||||| ||| | || Sbjct 2423457 GAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCTGGTGG 2423398 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| | | ||||| || | || || | || | Sbjct 2423397 GATACCTTCTTTGTCTTGAATTTT-AGCCTTAACATTCTCGATAGTATCTGAAGGCTCGA 2423339 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || ||||| || | |||||| || || ||||||||| Sbjct 2423338 CTTCGAGGGTAATTGTCTTACCAGTAAGCGTTTTAACGAAAATCTGCATA 2423289 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||||||| | || || ||||| || || || ||||| || ||||||||||| Sbjct 2849745 CCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCGGAA 2849804 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || || || |||||||| | || |||||| | || Sbjct 2849805 AGAGTGCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCTTTGTTGATCTGGTGGA 2849864 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || || || |||||| |||| || | || | ||||| | ||| || Sbjct 2849865 ATTCCCTCCTTATCTTGAATTTTGGCTTTC-ACGTTTTCAATTGTGTCAGAGGGTTCAAC 2849923 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || |||||||| ||||| ||||| ||||| || ||||| Sbjct 2849924 TTCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 2849971 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| || ||||| || || || |||||||| ||||||||||| || Sbjct 2423745 ACCACCTCGCAGACGCAAGACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCAGA 2423686 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| | || || | || || |||||||| || | ||||||||| ||| | || Sbjct 2423685 AAGGGTGCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGG 2423626 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || | | |||| || | ||||| | || | Sbjct 2423625 AATTCCCTCCTTGTCCTGGATCTT-GGCCTTTACATTCTCAATAGTGTCAGAAGGCTCAA 2423567 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| ||||| || || || || || || || ||||||||| Sbjct 2423566 CTTCAAGAGTGATGGTTTTTCCAGTCAATGTCTTCACGAAAATCTGCATA 2423517 Score = 84.2 bits (92), Expect = 1e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||| || |||||| || || || ||||||||||| || Sbjct 2850656 ACCACCACGCAGACGAAGTACCAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCCGA 2850715 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 ||| ||||| | || ||||| || || |||||||| ||||| |||||||| || Sbjct 2850716 GAGAGTGCGGCCATCTTCCAACTGCTTGCCGGCAAAGATCAATCGCTGCTGGTC 2850769 >seq33 Length=1899332 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||| | | |||||| || |||||| || ||||| ||||| || || || Sbjct 110891 ACCTCCTCTCAGCCTGAGCACCAAGTGAAGAGTGGATTCCTTTTGGATGTTATAGTCTGA 110832 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || ||||| ||||| ||||| || || | ||| ||||| ||| |||| Sbjct 110831 AAGAGTGCGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGG 110772 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700 | || |||||||| ||||| |||| ||| ||| ||||| | |||| Sbjct 110771 GATGCCCTCTTTGTCCTGGATTTTTGCCTTCA-CATTCTCAATAGTGTCTGAAGCCTCCA 110713 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | || | ||||| || ||||| || | |||||||| ||||||||||| || Sbjct 110712 CCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATCTGCATTGT 110661 Score = 105 bits (116), Expect = 4e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||| | | ||| || || || ||| || || || |||||||| || || Sbjct 99896 ACCTCCTCTCAGCCTAAGCACTAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGA 99955 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| | || ||||| ||||| ||||| || || | ||| ||||| ||| |||| Sbjct 99956 GAGTGTGCGGCCATCTTCCAACTGTTTACCGGCGAATATAAGACGTTGCTGGTCTGGCGG 100015 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| ||| || || | |||| || | ||||| | |||| Sbjct 100016 GATGCCCTCTTTGTCCTGAATCTT-TGCCTTCACATTCTCAATAGTGTCTGAAGCCTCCA 100074 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | || | ||||| || ||||| || | |||||||| ||||| ||||| || Sbjct 100075 CCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATTTGCATTGT 100126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328700005938240