Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq434 215 5e-51 seq33 187 2e-42 seq12 136 4e-27 >seq434 Length=190249 Score = 215 bits (238), Expect = 5e-51 Identities = 350/501 (70%), Gaps = 2/501 (0%) Strand=Plus/Minus Query 59923 AAAGTCGTTGCCGCATATTTTGTCGAATGGGGTGTTTATCCTAGAAATTTTCCTGTAGAT 59982 || || |||| ||| || || ||||||||||| || || || || || || || || || Sbjct 114825 AAGGTTGTTGGCGCTTACTTCGTCGAATGGGGCGTCTACCCCAGGAAGTTCCCCGTCGAC 114766 Query 59983 CGAGTGCCCACTCCTAATCTATCGCATATTCTATACGGATTTATTCCGATATGCGGCGGC 60042 || || |||| || ||||| | ||| |||| ||||| || || || || ||||| || Sbjct 114765 CGCGTACCCATCCCGAATCTTACCCATCTTCTGTACGGTTTCATCCCAATCTGCGGTGGA 114706 Query 60043 GACGGTATCAACGACAGTCTTAAAACCATAACCGGTAGTTTCGAAGCGCTTCAGCGATCG 60102 || || |||||||||||| | ||| || || |||||| |||| || || ||||| Sbjct 114705 GATGGCATCAACGACAGTTTGAAAGAAATCGAAGGCAGTTTCCAAGCTCTGCAACGATCC 114646 Query 60103 TGTTCAGGTCGAGACGACTTTAAAGTATCAATTCACGATCCATGGGCCGCCGTCCAGAAA 60162 || || | || ||||| |||||||| || ||||| || ||||| || | |||||| Sbjct 114645 TGCAGCGGCAGGGAAGACTTCAAAGTATCGATCCACGACCCTTGGGCAGCTCTTCAGAAA 114586 Query 60163 CCCCAAAAACAAGTAACCGCTTGGAACGAACCATACAAAGGTAATTTCGGACAATTAATG 60222 || ||||| | | | ||||| ||||| ||||| ||||| ||||| || | ||| Sbjct 114585 CCACAAAAGGGTTTGGCGTCCTGGAATGAACCCTACAAGGGTAACTTCGGCCAGCTGATG 114526 Query 60223 GCAGCCAAACTGGCAAATCCCCACATCAAAGTGTTGCCCTCGATCGGAGGTTGGACTCTA 60282 |||| ||||| || || | || | || || || | || || ||||| | Sbjct 114525 ATGTTGAAACAGGCAAGACCTGACCTGAAGATCTTACCTTCCGTTGGTGGCTGGACCTTG 114466 Query 60283 TCCGATCCGTTCTTTTACTTTCAC-GATACGGATAAACGAAAGATTTTTGTAGATTCTGT 60341 | ||||| ||||| | | ||||| || | || ||| | ||| || || || ||||| Sbjct 114465 GCTGATCCATTCTTCTTC-TTCACTGACAAGGTTAAGAGGAAGCGCTTCGTCGACTCTGT 114407 Query 60342 CGTGGAGTTTCTACAGACGTGGAAATTTTTCGACGGTGTCGACATCGACTGGGAGTTTCC 60401 ||| || || | || |||||||| |||||||| || ||||||||||||||||| || Sbjct 114406 TAAGGACTTCCTTGAAACCTGGAAATTCTTCGACGGAGTGGACATCGACTGGGAGTTCCC 114347 Query 60402 CGGCGGAAAAGGTGCCAATCC 60422 || || || || || || || Sbjct 114346 TGGTGGTAAGGGCGCTAACCC 114326 >seq33 Length=1899332 Score = 187 bits (206), Expect = 2e-42 Identities = 708/1088 (65%), Gaps = 36/1088 (3%) Strand=Plus/Minus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 || ||||| ||||| | ||| ||||| || || || | | ||||||||| ||||| ||| Sbjct 686937 ACAGTGAACTGGATAGCATTTGCGGCTGGCTTCGTGCGTAAATAGTACATTCCCGTTTTT 686878 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758 || ||| | | ||| | ||| ||| ||||||| ||| | ||| | || || || Sbjct 686877 AAGCCCATTTTCCACGCATAGAAATGAATAGATGTCAATTTACCATAATTTGGTTCAGCA 686818 Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818 || || ||| | |||||||||||||| || | | || | ||| || ||||| || Sbjct 686817 ACATGAATATTGAAGGATTGGCTCTGATCAATAAATGCCCCTCTGTCAGCAGCCAT-TTG 686759 Query 136819 AATAGTACTTTTTGCTTA-ATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGG 136877 || || ||||| | | | |||||| | |||||| | | ||| | | || || Sbjct 686758 TATTGTTGTTTTTACAGACACTTCCCAGACAGTTTTATATAAGTCCCTTATATCTTTAGG 686699 Query 136878 AATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGAT---TTTCATCATGAGATC 136934 |||| | || ||||| || | |||||| || || | |||||| || |||| || Sbjct 686698 AATTGCTTCAATATTTTGAATAGATCCATTATTGTGGATGATAAGATTTTTCATATCTTC 686639 Query 136935 AGTCGAGTATACGTTGCTCTCTATGAGTT---TATCG-ACGAGATGCTGATTTACTACTT 136990 | || || | || | |||| | ||| | | ||| ||||| || |||| Sbjct 686638 A-TCCCATAAA------TCAGCTTCAGTTAAATCTCGTAACAAATGATGATTAACAACTT 686586 Query 136991 GATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATT 137050 | |||| || || | |||| | || | || ||| || || || || |||| Sbjct 686585 GGAATTCACCTGACAAGACTCGTCTCTGATAAATGTTGGAAGTAAATGGTTCAAATGATT 686526 Query 137051 CGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAAT 137110 | || || ||||| || || ||||| | || || ||||| ||| | || | |||| Sbjct 686525 CATTATTTCCCAATATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTAATAATAGGGAAT 686466 Query 137111 TCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGATTGTTCG 137170 | | | ||| ||| ||| | || || ||||| ||| ||||||| || | Sbjct 686465 TTCTAAGACCATGTTTGGCAATTTTTTCTTTGAGTGACACCCAATTCCACA---AGTCTG 686409 Query 137171 ATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCAT 137230 ||||| ||||||||| |||| | ||||| | || |||| ||||||| || ||| Sbjct 686408 TGGGGGTTTTATTCCACATATCATATTGCAATATACCTTGACTGGCAGGACAGCCTTCAT 686349 Query 137231 AAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCATAGT 137290 ||| ||||| || | | | || | ||| ||| ||||||| ||||| | Sbjct 686348 AAGTCTCATAGACGCCATACTTCTCAGCTAACTCACAACTGGCTTCTAGTGCCCCATAAT 686289 Query 137291 AAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATAT 137350 |||| ||||| | |||| | ||| |||| | ||| | | || ||||| || ||| Sbjct 686288 AAATTGTTTCAAATATTTGTTGATTTAATTTAATTGCTGCCTCACTTTCGTAAGGTATAC 686229 Query 137351 CCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTGTTTAA 137410 || || | | || ||||| || | |||||| | || || ||||| |||| ||| | | Sbjct 686228 GCATTAAAACAAATGCATCAGCTAATCCTTGGACTCCAATTCCGATGGGTCGGTGCCTCA 686169 Query 137411 AATTTGA-TATTTGAGCGCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCTATTGAGA 137469 |||||| | ||| | || | | |||||| | ||| | || |||||| |||| ||| Sbjct 686168 TATTTGAGTTTTTTGCCTCTGGC-ACTGGATAATAATTTACATCAATAATTTTATTTAGA 686110 Query 137470 TTGTTAG-TAACGACTCTGGACACTTTGTAGAGCAATT--CGAAATCGAAGCTTTTAGAC 137526 || | || || | || | | |||| | | | || ||||| | |||| Sbjct 686109 TTCTGAGTTATAGTCT-TAGTAACTTCCTTTA--ATTTGGTGAAATTATATGTTTT---G 686056 Query 137527 TGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTTC-TGT 137585 | | || |||| |||| | ||||| || |||| ||||| || ||| ||| | | Sbjct 686055 TCCTCATTCACAAACATATTTAAAGCAATTGATGCTAGATTGCACACAGCCACTTCATCT 685996 Query 137586 ATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTCCCAAATT 137645 || | |||||| ||||||||| | ||| | |||||| | || ||||| || Sbjct 685995 GATG-AGGTGTATTCTACAATTTCAGTGCACAAGTTGCTGCATTTAATAGTACCCAAGTT 685937 Query 137646 CTTTTGATTG-TTTTTCTCGTTGACGTG-ATCTTTATATATCATATACGGAGTTCCGGTT 137703 |||||| ||| ||||||| ||| | || ||||||||| | ||| || |||||||| ||| Sbjct 685936 CTTTTGGTTGCTTTTTCT-ATTG-CATGAATCTTTATAAAGCATGTATGGAGTTCCTGTT 685879 Query 137704 TCGACTTG 137711 || ||||| Sbjct 685878 TCAACTTG 685871 >seq12 Length=2918994 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| ||||| ||||| || ||| | || || | ||||| ||| || Sbjct 2849972 CATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTC 2849913 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || ||| |||||| ||||| ||||| || || || ||||| Sbjct 2849912 TGACACAATTGAAAACGTGAAAGCCAAAATTCAAGATAAGGAGGGAATTCCACCAGATCA 2849853 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | |||| || ||||| || || ||||| | | | | | ||||||||| Sbjct 2849852 ACAAAGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGCACTCTTTCCGATTACAA 2849793 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||||||| ||||| || |||||||||| |||| |||||||| |||| Sbjct 2849792 TATTCAAAAGGAATCAACACTTCATTTAGTTCTAAGGTTGAGAGGTGGAA 2849743 Score = 113 bits (124), Expect = 4e-20 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || ||||||||||| || || ||| | ||||| | || || | |||| | Sbjct 2852921 ATGCAAATTTTCGTAAAAACATTGACTGGCAAAACCATCACTTTAGAGGTTG-AGCCTTC 2852863 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || ||| ||||| ||||| |||||||| || || ||||| Sbjct 2852862 TGACACAATCGAAAATGTTAAAGCCAAAATCCAGGATAAGGAGGGTATCCCACCTGATCA 2852803 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTAC 25351 |||| || | || | | ||||||||| | ||||||| | | | ||| || ||| Sbjct 2852802 GCAACGATTGATCTTTGCCGGCAAACAGTTGGAAGATGGACGCACATTATCA--GACTAC 2852745 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||| ||||||||||| ||| |||| ||||| || | ||| | ||||||| Sbjct 2852744 AATATCCAAAAAGAATCTACCCTTCACTTAGTATTGCGTTTGCGCGGAGGAA 2852693 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| || ||||| || | ||||| | ||||| ||| || | Sbjct 2850427 ATGCAAATCTTCGTCAAAACCTTGACCGGCAAGACTATCACCCTAGAAGTTGAACCCTCC 2850368 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || ||| ||||| || || || ||||| || || |||||| Sbjct 2850367 GACACTATTGAAAATGTTAAAGCCAAAATCCAGGACAAGGAAGGTATTCCACCAGATCAG 2850308 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | || ||||||||| || ||||| | | | | | |||||||||| Sbjct 2850307 CAGCGATTGATCTTCGCCGGCAAACAGCTGGAAGACGGTCGCACACTTTCCGATTACAAT 2850248 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||| |||||||| | || ||||| Sbjct 2850247 ATTCAAAAGGAATCCACTCTACACTTAGT 2850219 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| | || || || | || || |||||||||| ||| | Sbjct 2423290 ATGCAGATTTTCGTTAAAACGCTTACTGGTAAGACAATTACCCTCGAAGTCGA-GCCTTC 2423348 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||||||| | || || |||||| || ||||| ||||| || || || || Sbjct 2423349 AGATACTATCGAGAATGTTAAGGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGACCA 2423408 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | || | | |||||| || || ||||||| | | || || ||||| Sbjct 2423409 GCAAAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAA 2423468 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 |||||||| ||||||||| |||| Sbjct 2423469 CATTCAAAAGGAATCCACCCTTCA 2423492 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || ||||| || |||||| | ||||| | ||||| || ||| | Sbjct 2423974 ATGCAGATTTTCGTGAAGACATTGACTGGAAAAACCATCACCCTAGAAGTTGA-GCCTTC 2424032 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||||||||| | || || || || || || ||||| || || || || || Sbjct 2424033 TGATACTATCGAAAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCA 2424092 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || || | || |||||| || || ||||||| | | | | | ||| ||||| Sbjct 2424093 GCAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCCGACTACAA 2424152 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| ||||| || || | ||||| || || | ||| |||| || Sbjct 2424153 CATTCAGAAAGAGTCTACTTTGCATTTGGTTTTGCGTTTGCGAGGTGG 2424200 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || ||||| || | || || | || ||||| ||| | Sbjct 2850199 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATTACATTGGAGGTCGA-GCCTTC 2850141 Query 25235 G-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 | | || ||||| | || ||| |||||| || |||||||| || || || || || Sbjct 2850140 GGACACGATCGAAAATGTCAAAGCCAAAATTCAAGACAAAGAGGGAATTCCACCAGACCA 2850081 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 || ||| | || | || |||||| ||| | || |||| ||| |||| | ||||| Sbjct 2850080 ACAGAGATTGATCTTCGCCGGCAAGCAATTGGAGGATGGACGAACATTGTCTG--ATTAC 2850023 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||| || ||||| || | |||||||| Sbjct 2850022 AATATTCAGAAGGAATCTACGTTGCATTTAGT 2849991 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| || || || || | ||||| | ||||| || || Sbjct 2852465 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACTATCACACTAGAAGTTGAGCCCTCT 2852406 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| |||||| || || || ||||| || || || ||| Sbjct 2852405 GACACAATTGAAAATGTCAAAGCTAAAATTCAGGACAAGGAAGGTATTCCTCCAGACCAG 2852346 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || || | || | || |||||| ||| | ||||||| ||| |||| | |||||| Sbjct 2852345 CAGCGATTGATCTTCGCCGGCAAGCAATTGGAAGATGGGCGAACCTTGTCTG--ATTACA 2852288 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||||| || |||||||| |||| || || Sbjct 2852287 ATATTCAGAAGGAATCCACTCTTCACTTGGT 2852257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445088853011040