Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq278 127 2e-24 seq12 96.9 3e-15 >seq278 Length=307000 Score = 127 bits (140), Expect = 2e-24 Identities = 202/290 (70%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 99851 ATGTCCGGCCCCGTGCACCCTAAATACGGCACTAAATCTGCACGTTTAGAAACTTTTGTG 99910 ||| |||||||||| ||||| | || | || |||| ||||| | |||| Sbjct 239076 ATGGCCGGCCCCGTACACCCACGCTTCGCTTCCGAAGCTGCGCGTTTGCGCAGTTTTAAA 239017 Query 99911 GATTGGCCGCTCAGTTTGAAACAAAAACCAGAGCAATTGGCCGAAGCCGGTTTTTATTAC 99970 || ||||||| | || |||||||||||| || | |||||||| ||||| | ||| Sbjct 239016 GACTGGCCGCGATGCATGCGGCAAAAACCAGAGGAACTTGCCGAAGCTGGTTTCTTCTAC 238957 Query 99971 ACCGGCAAAGGTGACAAAGTTAAATGTTTTCATTGCGACGGCGGCCTCAAAGACTGGGAA 100030 ||||| | || || || || ||||| ||||||| ||||| | |||||||||||| Sbjct 238956 ACCGGTCAGGGGGATAAGACCAAGTGTTTCTATTGCGATGGCGGTTTGAAAGACTGGGAA 238897 Query 100031 AGCACCGACGAGCCGTGGCATGAACACGCACGTTGGTTTGATCGCTGCACATACGTGCGG 100090 | |||| ||| ||| | | ||||| || ||||| || |||||| | ||||||| | Sbjct 238896 AATGATGACGTGCCCTGGGAACAGCACGCGCGCTGGTTCGACCGCTGCGCCTACGTGCAG 238837 Query 100091 CTTGTAAAGGGTTACGACTACGTGCAGCGCGTGCTTAGCGAAGCGTGCGT 100140 || || ||||| ||| ||||| ||| ||| | ||| || ||||| Sbjct 238836 CTGGTGAAGGGCCGCGAGTACGTACAGAAGGTGATGTCCGAGGCCTGCGT 238787 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 99638 AACGGGTTTTATTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTTTGCAAAGTTGAA 99697 || || ||||||||| | || |||| || ||||| ||||| || || |||||||||||| Sbjct 239304 AATGGATTTTATTATCTTGGCCGCGGAGATGAAGTACGCTGTGCATTCTGCAAAGTTGAA 239245 Query 99698 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCTGCAGATCATAAACGATGGGCGCCGCAA 99757 || ||| | ||| | || ||||| || ||||| || ||| | || |||||||| ||| Sbjct 239244 ATTATGAGATGGGTCGAAGGCGATGATCCGGCCAAGGACCATCAGCGTTGGGCGCCACAA 239185 Query 99758 TGCCCGTT 99765 ||||| || Sbjct 239184 TGCCCATT 239177 >seq12 Length=2918994 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| ||||| || ||||| || |||||||| | ||| |||||| Sbjct 2849971 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTCT 2849912 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | |||||| |||||| || || || || | || |||||| Sbjct 2849911 GACACAATTGAAAACGTGAAAGCCAAAATTCAAGATAAGGAGGGAATTCCACCAGATCAA 2849852 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| || ||||| || | ||||| ||| | ||||||||| Sbjct 2849851 CAAAGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGCACTCTTTCCGATTACAAT 2849792 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || ||||| ||||| ||||| |||||||| | ||||| |||| ||| Sbjct 2849791 ATTCAAAAGGAATCAACACTTCATTTAGTTCTAAGGTTGAGAGGTGGA 2849744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402324711318176