Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq33 152 6e-32 >seq33 Length=1899332 Score = 152 bits (168), Expect = 6e-32 Identities = 490/746 (66%), Gaps = 17/746 (2%) Strand=Plus/Minus Query 110681 AACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCA 110740 || ||||||| | | || |||| | || ||||| | || |||||||||| ||||| Sbjct 686583 AATTCACCTGACAAGACTCGTCTCTGATAAATGTTGGAAGTAAATGGTTCAAATGATTCA 686524 Query 110741 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 110800 ||||| ||||| ||||| || ||||| || ||||||||||| || | || || || Sbjct 686523 TTATTTCCCAATATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTAATAATAGGGAATTT 686464 Query 110801 CGAAGACCCTTCTCCTTGATGCGTTCCTTGAGA-ACATCCCAGTCGT--AGT-TGAGCTT 110856 | |||||| | | || ||| ||||| ||| || | || ||| || | Sbjct 686463 CTAAGACCATGTTTGGCAATTTTTTCTTTGAGTGACACCCAATTCCACAAGTCTGTGGG- 686405 Query 110857 GGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAA 110916 ||||| | | |||||| ||| | || | | ||||| || ||| | || ||| | Sbjct 686404 GGTTTTA---TTCCACATATCATATTGCAATATACCTTGACTGGCAGGACAGCCTTCATA 686348 Query 110917 GGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATA 110976 || |||||| || | ||||| || ||||| || || || || | | | ||| Sbjct 686347 AGTCTCATAGACGCCATACTTCTCAGCTAACTCACAACTGGCTTCTAGTGCCCCATAATA 686288 Query 110977 CATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCG 111036 || |||||||| || | ||| | | | ||| | || || | | ||| Sbjct 686287 AATTGTTTCAAATATTTGTTGATTTAATTTAATTGCTGCCTCACTTTCGTAAG-GTATAC 686229 Query 111037 GCAC-AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCA 111095 ||| |||| |||| |||| || | ||||| || || | || || |||| ||| | || Sbjct 686228 GCATTAAAACAAATGCATCAGCTAATCCTTGGACTCCAATTCCGATGGGTCGGTGCCTCA 686169 Query 111096 TATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGA 111154 |||| || ||| || ||| || |||||| ||||| ||||| | | |||||| Sbjct 686168 TATTTGAGTTTTTTGCC-TCTGGCACTGGATAATAATTTACATCAATAATTTTATTTAGA 686110 Query 111155 TTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCT 111214 || | || | | |||| || | ||| | | ||| ||| | | || | || Sbjct 686109 TTCTGAGTTATAGTCTTAGTAACTTCCTTTAATTTGGTGAAATTATATGTTT---TGTCC 686053 Query 111215 TCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTA 111274 ||||| ||| || | | || |||||||| | |||||| |||||| ||||| | | Sbjct 686052 TCATTCACAAACATATTTAAAGCAATTGATGCTAGATTGCACACAGCCACTTCATC-TGA 685994 Query 111275 TCTG-TGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTT 111333 | | |||| |||| |||||| || || |||||| | ||||| || ||||| ||||| Sbjct 685993 TGAGGTGTATTCTACAATTTCAGTGCACAAGTTGCTGCATTTAATAGTACCCAAGTTCTT 685934 Query 111334 TTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGT 111393 |||||| || || | ||||| | ||| || || |||||||| || || || || || Sbjct 685933 TTGGTTGCTTTTTCTATTGCATGAATCTTTATAAAGCATGTATGGAGTTCCTGTTTCAAC 685874 Query 111394 CTGTGATTTGAGAATAGCCTTCCAAA 111419 |||| || || |||||| ||||||| Sbjct 685873 TTGTGCTTCGATAATAGCTTTCCAAA 685848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024173151200