Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq33 132 6e-26 >seq33 Length=1899332 Score = 132 bits (146), Expect = 6e-26 Identities = 636/994 (64%), Gaps = 23/994 (2%) Strand=Plus/Plus Query 104624 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAG 104683 || |||||||| || ||||| | || |||||||| ||| ||| || | || Sbjct 685586 GAACCATGGCATGCTGATATATTTGAATTCCTTGATTTGAAAAAGAACACTGGGAAAGAA 685645 Query 104684 GAGGCGCGGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAG 104742 || | || |||| | || || |||| ||| | ||||| || || | |||||||| || Sbjct 685646 GAAGTCCG-TGCCAGAGAGCTATTCTATGCTTTATGGATACCTGACTTGTTCATGAAAAG 685704 Query 104743 AGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA 104802 ||| || | | ||||| | || | || || | | ||||| || | || Sbjct 685705 AGTAGAAAGCAATCAAGATTGGAGTATCATGTGCCCCCATGAATGTCCTGGACTAGCAGA 685764 Query 104803 -TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGG-CG 104860 || | ||||||||| |||||||| | || || || || |||| ||||| || Sbjct 685765 CTGTTG-GGGTGAGGAATTTGAAGCTTTGTATGAGAAATATGAAAAAGAGGGTCGCTTCG 685823 Query 104861 ACTGCGACG-GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGAC 104919 || || ||| |||| | | | |||||||||||| || | | ||| || || Sbjct 685824 --TGAAACAAGTGAGAGCTCAAGTTCTTTGGAAAGCTATTATCGAAGCACAAGTTGAAAC 685881 Query 104920 TGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTT 104979 || || |||||||||||||| ||||| | || || ||| || || |||||||| || Sbjct 685882 AGGAACTCCATACATGCTTTATAAAGATTCATGCAATAGAAAAAGCAACCAAAAGAACTT 685941 Query 104980 GGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGA 105039 |||| || || | ||| | || || ||||| | |||| || |||||| Sbjct 685942 GGGTACTATTAAATGCAGCAACTTGTGCACTGAAATTGTAGAATACACCTCATCAGATGA 686001 Query 105040 GACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAA 105099 ||||||||| || || |||||||| ||| | | || |||| || || |||||| Sbjct 686002 AGTGGCTGTGTGCAATCTAGCATCAATTGCTTTAAATATGTTTGTGAAT-GAG-GACAAA 686059 Query 105100 GACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAG 105159 |||| | ||| ||| | | |||||||| || ||| | || | || ||||| | Sbjct 686060 -ACATATAATTTCACCAAATTAAAGGAAGTTACTAAGACTATAACTCAGAATCTAAATAA 686118 Query 105160 AGTTATTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACC 105218 | |||||||| ||||| ||| || || ||| || || || |||||||| |||| Sbjct 686119 AATTATTGATGTAAATTATTATCCAGTGCCAGA-GGCAAAAAACTCAAATATGAGGCACC 686177 Query 105219 GTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCAT 105278 | || || || | || || || || | || |||| ||| || | || | | Sbjct 686178 GACCCATCGGAATTGGAGTCCAAGGATTAGCTGATGCATTTGTTTTAATGCGTATACCTT 686237 Query 105279 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCG 105338 || || | ||| | || | ||| | |||||||| || || ||| | | | Sbjct 686238 ACGAAAGTGAGGCAGCAATTAAATTAAATCAACAAATATTTGAAACAATTTATTATGGGG 686297 Query 105339 CTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 105398 | || || || |||| ||||| || ||| |||| ||||| || | ||| || | Sbjct 686298 CACTAGAAGCCAGTTGTGAGTTAGCTGAGAAGTATGGCGTCTATGAGACTTATGAAGGCT 686357 Query 105399 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGAC-----CAAGCT 105453 ||| || ||||| | | |||| |||||||||| | | | || || || Sbjct 686358 GTCCTGCCAGTCAAGGTATATTGCAATATGATATGTGGAA---TAAAACCCCCACAGACT 686414 Query 105454 TCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 105513 | | | |||| | ||||| ||| || | | |||||| | || || Sbjct 686415 T--GTGGAATTGGGTGTCACTCAAAGAAAAAATTGCCAAACATGGTCTTAGAAATTCCCT 686472 Query 105514 CCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 105573 | | |||||||||||||| || ||||| || ||||| ||||| |||||||||| || Sbjct 686473 ATTATTAGCTCCAATGCCAACTGCATCCACTGCTCAAATATTGGGAAATAATGAATCATT 686532 Query 105574 TGAACCCTACACGACGAACATCTATCTGAGAAGA 105607 |||||| | || | ||||| |||| |||| || Sbjct 686533 TGAACCATTTACTTCCAACATTTATCAGAGACGA 686566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583253531112280