Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq12 93.3 3e-14 >seq12 Length=2918994 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| || ||||| || || || |||| ||||| | Sbjct 2850655 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACCCTTGAGGTCGAGCCATCT 2850596 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| || ||| ||||| || || || ||| | || || | Sbjct 2850595 GACACGATCGAAAAT--GTTAAAGCCAAAATCCAGGATAAGGAGGGTATCCCACCTGACC 2850538 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || | || || || || || || || ||||| || | |||| | || || |||| Sbjct 2850537 AACAGAGATTGATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACTCTTTCAGACTACA 2850478 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| |||||||||||| ||||||||| ||||||| || Sbjct 2850477 ACATCCAAAAGGAGTCCACTTTGCATTTAGTTTTGCGTCTGCGTGGTGG 2850429 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| || || || || ||||| || || | || Sbjct 2852144 GACAAAGAAGGAATTCCCCCAGACCAGCAGCGATTGATCTTCGCCGGCAAGCAGCTTGAA 2852085 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| |||| | || || ||||||||||| || ||| |||||||||||| |||||| Sbjct 2852084 GACGGTCGCACACTTTCGGACTACAACATCCAGAAGGAGTCCACTTTGCATTTAGTTTTG 2852025 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 2852024 CGTCTGCGTGGTGG 2852011 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || | || || ||||| || || |||| Sbjct 2424067 GACAAGGAGGGAATTCCCCCAGACCAGCAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAA 2424126 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| | ||||| |||||||| || |||||| |||||||||||||||||| Sbjct 2424127 GATGGTCGCACTCTTTCCGACTACAACATTCAGAAAGAGTCTACTTTGCATTTGGTTTTG 2424186 Query 28003 CGTTTGCGTGGCGG 28016 |||||||| || || Sbjct 2424187 CGTTTGCGAGGTGG 2424200 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || | || ||||| || || || |||| Sbjct 2424523 GACAAGGAGGGAATTCCCCCAGACCAGCAGCGTCTTATCTTTGCTGGCAAGCAGCTGGAA 2424582 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| | || || |||||||| || |||||| |||||||||||||||||| Sbjct 2424583 GATGGACGCACTCTTTCTGACTACAACATTCAGAAAGAGTCTACTTTGCATTTGGTTTTG 2424642 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 2424643 CGTCTGCGTGGTGG 2424656 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||||||||| | || || ||| ||| || |||| || || | Sbjct 2423061 AATGCAGATTTTTGTGAAAACCTTGACGGGTAAAACTATCACTCTTGAAGTTGAGCCATC 2423120 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 |||| | | || || ||| ||||| ||||||||||| |||| || || Sbjct 2423121 CGACACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGATCA 2423180 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| || | || || || ||||| || || || |||| |||| |||| || ||||| Sbjct 2423181 GCAGCGACTGATCTTCGCTGGAAAGCAGTTAGAAGACGGTCGCACACTGTCTGACTACAA 2423240 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||| || | || | ||| ||||| | ||||| || Sbjct 2423241 CATCCAAAAAGAATCTACGCTCCACCTTGTTCTGCGTCTCCGTGGTGG 2423288 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| || || |||||||| ||||| ||||| || | ||||| || || || Sbjct 2852807 GATCAGCAACGATTGATCTTTGCCGGCAAACAGTTGGAAGATGGACGCACATTATCAGAC 2852748 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||||||||| || | || || || ||||||||||| || || Sbjct 2852747 TACAATATCCAAAAAGAATCTACCCTTCACTTAGTATTGCGTTTGCGCGGAGG 2852695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355858075938219