Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq12 95.1 1e-14 seq33 93.3 4e-14 >seq12 Length=2918994 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || |||||||| || || ||||| | ||| || ||| | Sbjct 2423732 CGCAAGACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCAGAAAGGGTGCGTCCA 2423673 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||| ||||| ||||| ||||||||||||||||| | ||| | | ||| ||| Sbjct 2423672 TCTTCAAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTG 2423613 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||| || || | || | | || || | ||| || || | ||||| Sbjct 2423612 TCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATG 2423553 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| |||| || || || || || ||||| Sbjct 2423552 GTTTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 2423518 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || ||||| || ||||| ||||| | ||| |||||| | Sbjct 2424872 CGCAAGACCAAGTGAAGGGTAGATTCTTTCTGGATATTGTAATCAGAAAGGGTTCGTCCA 2424813 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||| ||||| ||||| ||||||||||||||||| | ||| | | || ||| Sbjct 2424812 TCTTCAAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCCTTG 2424753 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||| || || | | | | ||||| | ||| || || | ||||| Sbjct 2424752 TCCTGGATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCAACTTCTAGGGTGATG 2424693 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| |||| || || || || || ||||| Sbjct 2424692 GTTTTTCCAGTCAAGGTCTTTACGAAAATCTGCAT 2424658 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||||||| || || |||||| || || || || || | ||| || || | Sbjct 2423960 CGCAAGACCAAATGCAGAGTTGACTCTTTCTGAATGTTGTAGTCAGAAAGGGTACGCCCA 2423901 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||| ||||| || || ||||||||||||||||| | ||| | | || ||| Sbjct 2423900 TCTTCAAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCCTTG 2423841 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || |||||| || | | | | |||||| | |||||| || | |||||| Sbjct 2423840 TCTTGGATTTTAGCCTTTACGTTTTCAATGGTATCGGAAGGCTCCACTTCAAGGGTGATA 2423781 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || || || || || || || ||||| Sbjct 2423780 GTTTTACCAGTGAGGGTCTTCACGAAAATCTGCAT 2423746 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || || || || || ||||| || | ||| || || | Sbjct 2425556 CGCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCAGAAAGGGTACGCCCA 2425497 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||| ||||| ||||| ||||||||||||||||| | ||| | | ||| ||| Sbjct 2425496 TCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATTCCCTCCTTG 2425437 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||| || || | || | | || || | |||||| || | |||||| Sbjct 2425436 TCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCCACTTCAAGAGTGATA 2425377 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || || || || || || |||||||| Sbjct 2425376 GTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 2425342 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 || || ||||| ||| || ||||| ||||| ||||||| |||||| || |||| || Sbjct 2850219 ACTAAGTGTAGAGTGGATTCCTTTTGAATATTGTAATCGGAAAGTGTGCGACCGTCTTCC 2850278 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| || || || | |||||||| || | || | | || |||||| | Sbjct 2850279 AGCTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGTGGAATACCTTCCTTGTCCTGG 2850338 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 ||||| ||| | | | | || ||| | || || || | |||||| | || Sbjct 2850339 ATTTTGGCTTTAACATTTTCAATAGTGTCGGAGGGTTCAACTTCTAGGGTGATAGTCTTG 2850398 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| || ||||||||||| Sbjct 2850399 CCGGTCAAGGTTTTGACGAAGATTTGCAT 2850427 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||| || || || |||||||| | || |||||| || || || || |||| | Sbjct 2424200 CCACCTCGCAAACGCAAAACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCGGAA 2424141 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| ||||| || || ||||||||||||||||| | ||| Sbjct 2424140 AGAGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGA 2424081 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| |||||| ||| || || | | | | ||||| | ||| || Sbjct 2424080 ATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTTTCGATAGTATCAGAAGGCTCAACT 2424021 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| ||||||| |||| || || || || || ||||| Sbjct 2424020 TCTAGGGTGATGGTTTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 2423974 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||||||| | || |||||| || || || || || | ||| || ||| | Sbjct 2424644 CGCAAAACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGTCCA 2424585 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| ||||| ||||| ||||||||||||||||| | ||| | | ||| ||| Sbjct 2424584 TCTTCCAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTG 2424525 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||| || || | || | | || || | || || |||| ||||| Sbjct 2424524 TCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGTTCTACCTCCAGAGTGATG 2424465 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| |||| || || || || || ||||| Sbjct 2424464 GTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 2424430 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||||||| || || |||||| || || || || || | ||| || ||| | Sbjct 2424416 CGCAAGACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCA 2424357 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || |||||||| ||||| || || ||||||||||||||||| ||||| Sbjct 2424356 TCTTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGTGG 2424310 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || ||||| || || || ||||| | ||| || || | Sbjct 2425100 CGCAAGACCAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAATCAGAAAGAGTACGCCCA 2425041 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||| ||||| || || ||||||||||||||||| | ||| | | || ||| Sbjct 2425040 TCTTCAAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATTCCTTCCTTG 2424981 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||| || || | | | | ||||| | ||| || || | |||||| Sbjct 2424980 TCCTGGATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGCTCAACTTCTAGGGTGATA 2424921 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| |||| || || || || || ||||| Sbjct 2424920 GTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 2424886 >seq33 Length=1899332 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAA-CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 |||||||| | || ||| ||| || || || ||| || || || || || || || | Sbjct 99897 CCTCCTCTCA-GCCTAAGCACTAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGA 99955 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 ||||| || | || || | |||||| || || ||||||||||| |||||||| | || Sbjct 99956 GAGTGTGCGGCCATCTTCCAACTGTTTACCGGCGAATATAAGACGTTGCTGGTCTGGCGG 100015 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | || |||||||||| ||| | | || || | || | | || || | ||||| Sbjct 100016 GATGCCCTCTTTGTCC-TGAATCTTTGCCTTCACATTCTCAATAGTGTCTGAAGCCTCCA 100074 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || | ||||| | || |||||||| ||||| || ||||||||||| Sbjct 100075 CCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATTTGCAT 100123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429540380618261