Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq434 239 4e-58 >seq434 Length=190249 Score = 239 bits (264), Expect = 4e-58 Identities = 589/881 (67%), Gaps = 17/881 (2%) Strand=Plus/Minus Query 109140 CGCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTT 109199 ||| ||||| ||||||||||| || ||| | | || || ||||| ||| || || | Sbjct 114814 CGCTTACTTCGTCGAATGGGGCGTCTACCCCAGGAAGTTCCCCGTCGACCGCGTACCCAT 114755 Query 109200 GCCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAA 109259 || ||| | | ||| | ||||||||||| || ||||| || || || || |||||||| Sbjct 114754 CCCGAATCTTACCCATCTTCTGTACGGTTTCATCCCAATCTGCGGTGGAGATGGCATCAA 114695 Query 109260 CGACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCG 109319 |||| | ||| || |||||||| | ||| |||||||||| ||| |||| | Sbjct 114694 CGACAGTTTGAAAGAAATCGAAGGCAGTTTCCAAGCTCTGCAACGATCCTGCAGCGGCAG 114635 Query 109320 CGACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGG 109379 || || |||||||| || || |||||| |||||| || | || ||||| ||||| || Sbjct 114634 GGAAGACTTCAAAGTATCGATCCACGACCCTTGGGCAGCTCTTCAGAAACCACAAAAGGG 114575 Query 109380 CGTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATT 109439 || | | ||||| || || ||||| || ||||| || || ||||| | ||| Sbjct 114574 TTTGGCGTCCTGGAATGAACCCTACAAGGGTAACTTCGGCCAGCTGATGATGTTGAAACA 114515 Query 109440 GGCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACGTTGTCGGACCCGTT 109499 ||||| ||| || | || || |||| ||| | || || ||||| ||| | || || || Sbjct 114514 GGCAAGACCTGACCTGAAGATCTTACCTTCCGTTGGTGGCTGGACCTTGGCTGATCCATT 114455 Query 109500 TTATTTTATGCAC-GATTCGGCGAA-AAGAGCCACATTCGTTGAATCGGTGCGCGAATTT 109557 | | || | ||| || || || | || | | ||||| || || || || || Sbjct 114454 CT-TCTTCTTCACTGACAAGGTTAAGAGGAAGCGC-TTCGTCGACTCTGTTAAGGACTTC 114397 Query 109558 TTACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAAG 109617 | || ||||||||||| ||||| || ||||| || |||||||| || || || ||| Sbjct 114396 CTTGAAACCTGGAAATTCTTCGACGGAGTGGACATCGACTGGGAGTTCCCTGGTGGTAAG 114337 Query 109618 GGTGCCAATCCGAGTCTCGGCGACGCAACGCGCGACAGCAAAACGTACATTGCGTTGTTA 109677 || || || || |||||| | | |||| | | | ||| | | | || | Sbjct 114336 GGCGCTAACCCTGATCTCGGTAGC---CCTGACGACGGTCACATCTACGTCGAGCTGATG 114280 Query 109678 AAAGAGTTGCGCGCCATGTTGGACGA-CT---TGCAAACGGCCACCAACAAAACGTACGA 109733 || || || | | ||| | |||| || ||| || | | ||| ||| ||||| Sbjct 114279 AAGGAACTGAGAGAGATGCTCAACGAGCTGTCTGCCAA-GACAGGCAAGAAA---TACGA 114224 Query 109734 ATTGACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCGGC 109793 | |||| ||||| ||| | |||| || || ||| | ||||| || ||| | |||| Sbjct 114223 ACTGACTTCAGCCATCAGCTCTGGTTGGGACAAGATTCAGGTGGTAGACTACAAGGCGGC 114164 Query 109794 GCAACAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCAAA 109853 ||||| || |||| | || || || |||| || || ||||| || ||||||||||| Sbjct 114163 TCAACAGTACATGGATCACATCTTCTTGATGAGCTATGACTTCAAGGGAGCTTGGTCAAA 114104 Query 109854 C-ACGGACTTAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTGT 109912 | || ||| ||| | || | || || |||| ||| | ||||| || || || | Sbjct 114103 CGACACTCTT-GGCCACCAAGCTGCTCTGCACGCTCCCGCATGGAACCCCAAGGAGACTT 114045 Query 109913 ACACGACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaTTA 109972 |||| || || | | |||||| ||||| || ||| ||||| || || Sbjct 114044 ACACAACTGACTTCGGTGTCAAATTCCTGTTGGCTCAGGGAGTCAGTCCTAAGAAGATCG 113985 Query 109973 TAATTGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCGTC 110013 | |||| || || ||||||||||| || ||||| || ||| Sbjct 113984 TCGTTGGTGTTGCTATGTACGGCCGTGGTTGGACTGGAGTC 113944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409655822237223