Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq12 114 1e-20 seq278 91.5 1e-13 >seq12 Length=2918994 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || |||||||| ||||||||||| || || ||| | ||| |||||| | Sbjct 2850427 ATGCAAATCTTCGTCAAAACCTTGACCGGCAAGACTATCACCCTAGAAGTTGAACCCTCC 2850368 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || ||| | || ||| ||||| ||||| ||||| |||| ||||| Sbjct 2850367 GACACTATTGAAAATGTTAAAGCCAAAATCCAGGACAAGGAAGGTATTCCACCAGATCAG 2850308 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 || | | || | || |||||||| ||||||| || | ||| | ||||||| | Sbjct 2850307 CAGCGATTGATCTTCGCCGGCAAACAGCTGGAAGACGGTCGCACACTTT--CCGATTACA 2850250 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||| ||||| ||||| || ||||| ||||| | |||||||||||||| Sbjct 2850249 ATATTCAAAAGGAATCCACTCTACACTTAGTACTTCGTCTGCGCGGTGG 2850201 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 || ||||| || ||||| || || ||||| || |||||||| || | || ||||||| Sbjct 2853152 AACATGCAGATCTTTGTGAAGACTTTGACGGGGAAAACCATAACATTAGAGGTGGAACCC 2853093 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 ||| | ||| | || ||| ||||||| || || |||||| |||| |||| Sbjct 2853092 TCTGATACCATTGAAAACGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCTCCCGAT 2853033 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 ||||| || | || | || || ||||||||||||||| ||| | |||| || Sbjct 2853032 CAACAGAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGACGCACTCTTTCCGACTAC 2852973 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||| || || || ||||| || ||| | ||| ||||||| | ||||| Sbjct 2852972 AATATCCAGAAGGAGTCTACTCTTCATCTCGTGCTGCGTCTCAGAGGTGG 2852923 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| |||||||| ||||| ||||| || ||||| || || | ||| || || Sbjct 2423061 AATGCAGATTTTTGTGAAAACCTTGACGGGTAAAACTATCACTCTTGAAGTTGAGCCATC 2423120 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| || ||| | |||||| |||||| |||||||||||| ||||| ||||| Sbjct 2423121 CGACACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGATCA 2423180 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || | || || | || || || || || ||||| | || || | || || || Sbjct 2423181 GCAGCGACTGATCTTCGCTGGAAAGCAGTTAGAAGACGGTCGCACACTGTCTGACTACAA 2423240 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || |||||||||||||| || || | || ||||||| || ||||| Sbjct 2423241 CATCCAAAAAGAATCTACGCTCCACCTTGTTCTGCGTCTCCGTGGTGG 2423288 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| || || || ||||||||||| | ||| |||||| Sbjct 2849971 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTCT 2849912 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || ||| |||||| || || || || |||| |||||| Sbjct 2849911 GACACAATTGAAAACGTGAAAGCCAAAATTCAAGATAAGGAGGGAATTCCACCAGATCAA 2849852 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | |||| || ||||| || | ||||| ||| | ||||||| ||| Sbjct 2849851 CAAAGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGCACTCTTTCCGATTACAAT 2849792 Query 111280 ATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||| ||||| ||||| |||||||| Sbjct 2849791 ATTCAAAAGGAATCAACACTTCATTTAGT 2849763 >seq278 Length=307000 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 104735 AACGGGTTCTACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAA 104794 || || || || ||| | || |||| || ||||| ||||| || ||||||||||| ||| Sbjct 239304 AATGGATTTTATTATCTTGGCCGCGGAGATGAAGTACGCTGTGCATTCTGCAAAGTTGAA 239245 Query 104795 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACAG 104854 || ||| | ||| | || ||||| || |||||| || ||| | || ||||||||||| Sbjct 239244 ATTATGAGATGGGTCGAAGGCGATGATCCGGCCAAGGACCATCAGCGTTGGGCGCCACAA 239185 Query 104855 TGCCCGTT 104862 ||||| || Sbjct 239184 TGCCCATT 239177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421806074598472