Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2205 592 2e-164 seq1613 95.1 1e-14 seq2446 86.0 7e-12 >seq2205 Length=656796 Score = 592 bits (656), Expect = 2e-164 Identities = 1204/1761 (68%), Gaps = 50/1761 (3%) Strand=Plus/Plus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || || ||||| |||| |||||||||||||||||||| || | |||| | || ||| Sbjct 19221 GCTGGCTTCGTGCGTAAATAGTACATTCCCGTTTTTAAGCCCATTTTCCACGCATAGAAA 19280 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 || ||| ||| | ||| |||| | || || || | ||| ||||| | ||||| || Sbjct 19281 TGAATAGATGTCAATTTACCATAATTTGGTTCAGCAACATGAATATTGAAGGATTGGCTC 19340 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||| || || || || ||||| |||||||||| ||| | || ||| | | |||| Sbjct 19341 TGATCAATAAATGCCCCTCTGTCAGCAGCCATTTGTATTGTTGTTTTTACAGACACTTCC 19400 Query 53009 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATAGA 53064 || | ||||||||| || || |||| |||||| |||| | || |||| |||||||| Sbjct 19401 CAGACAGTTTTATATAAGTCCCTTA-TATCTTTAGGAATTGCTTCAATATTTTGAATAGA 19459 Query 53065 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 53124 |||| || || || ||| || || || |||| |||||| | || ||||| Sbjct 19460 TCCATTATTGTGGATGATAAGATTTTTCATATCTTCATCCCATAAATCAGCTTCAGTTAA 19519 Query 53125 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 53184 | ||| | | ||| ||||||| ||||| ||||| || ||||| |||| | || Sbjct 19520 ATCTCGTAACAAATGATGATTAACAACTTGGAATTCACCTGACAAGACTCGTCTTTGATA 19579 Query 53185 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 53244 ||| || ||| | ||||| | || |||||||||||||| ||||||||||| ||||| Sbjct 19580 AATGTTGGAAGTAAATGGTTCAAATGATTCATTATTTCCCAATATTTGAGCAGTGGATGC 19639 Query 53245 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCT 53302 ||| ||||| || || | |||| |||||||||||| ||||| | ||||| ||| Sbjct 19640 AGTTGGCATTGGAGCTAATAATAGGGAATTTCTAAGACC--ATGTTTGGCTATTTTTTCT 19697 Query 53303 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 53362 || || | |||||||||| | || | || ||| | Sbjct 19698 TTGAGTGACACCCAATTCCACAAGTCTGTGGGGGTTTTATTCCACATATCATATTGCAAT 19757 Query 53363 ATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 53421 ||||| | |||||| | || | ||| |||| || || || || | ||||||||||| Sbjct 19758 ATACCTTGACTGGCAGGAC-AGCCTTCATAAGTCTCATAGACGCCATACTTCTCAGCTAA 19816 Query 53422 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 53481 |||||||| || |||| ||| || |||||||| ||||| || || | | ||||| | Sbjct 19817 CTCACAACTGGCTTCTAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAATTT 19876 Query 53482 TTGTGCTTCCAGGCTATCAAATGG-ATAAT--TTAAGAGAATAAACGCGTCTGCTAATCC 53538 |||| || || || | || ||| |||| || ||| || || |||||||| Sbjct 19877 AATTGCTGCCTCACTTTCGTAAGGTATACGCATTAA---AACAAATGCATCAGCTAATCC 19933 Query 53539 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 53598 ||| || ||||| ||||| |||| || ||| |||| ||| ||| || ||||| | || Sbjct 19934 TTGGACTCCAATTCCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCTCTGGCACTGG 19993 Query 53599 ATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCA-CATCCT 53657 |||||||| | ||| ||||||||||| || || |||| || | | | | | |||| Sbjct 19994 GTAATAATTTACATCAATAATTTTATTTAGATT-CTGAGTTATAGTCTTAGTAACTTCCT 20052 Query 53658 TCAGTTTGAGAAAATCAAAT----TGTCCATCTATTACAAACATGTTCAATGCAATAGAT 53713 | | |||| |||| | || ||||| || | |||||||| || || ||||| ||| Sbjct 20053 TTAATTTGGTGAAATTATATGTTTTGTCC-TCATTCACAAACATATTTAAAGCAATTGAT 20111 Query 53714 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 53773 || ||||| || || || || |||| | | |||| || || |||||||| | Sbjct 20112 GCTAGATTGCACACAGCCACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCACAAG 20171 Query 53774 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 53833 || || || || || || || || || | ||| || || ||| | || || | ||| ||| Sbjct 20172 TTGCTGCATTTAATAGTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCTTTA 20231 Query 53834 TAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACA 53893 ||||| ||| |||| || || ||||||| || | ||| ||||| |||||||| | || Sbjct 20232 TAAAGCATGTATGGAGTTCCTGTTTCAACTTGTGCTTCGATAATAGCTTTCCAAAGAACT 20291 Query 53894 CGAGC-----CTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATC 53948 |||| ||| || || | ||||||| || ||| |||||| Sbjct 20292 TGAGCTCTCACTTGTTTCACGAAGCGACCCTCTTTT-----TCATATTTCTCATACAAAG 20346 Query 53949 GTTCAAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCATCCGGACACATCAAC 54007 |||||| || || |||||| || | | | | |||||||||||||| || ||||| | Sbjct 20347 CTTCAAATTCCTCACCCCAA-CAGTCTGCTAGTCCAGGACATTCATGGGGGCACATGATA 20405 Query 54008 GACCACTCTCCGTCAT--CCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 54064 ||| ||| | || | ||| |||| |||||| || | ||||| ||||| | ||| Sbjct 20406 CTCCAATCT---TGATTGCTTTCTACTCTTTTCATGAACAAGTCAGGTATCCATAAAGC- 20461 Query 54065 ATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 54123 ||| ||||| ||||||| | ||| || || || || |||||||| | ||| ||||| Sbjct 20462 ATAGAATAGCTCTCTGGCACGGACTTCTTCTTTCCCAGTGTTCTTTTTCAAATCAAGGAA 20521 Query 54124 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTT 54183 | | ||||||| |||||| ||||| |||||||||| | | || || | ||| || Sbjct 20522 TTCAAATATATCAGCATGCCATGGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTTATT 20581 Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||||| || |||| |||| ||| ||||| || |||||||| ||||| || | | ||| Sbjct 20582 ACCTCCTTGGTCTACATATCGAGCAGTGTTGTTGTAAACTCTTAACATGGGTACTAGACC 20641 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATT 54301 ||| || ||||||| || || | ||||| |||| | || | ||| | | || | Sbjct 20642 ATTAGAGACACCATTTGTACCAGCTATATAAGTTCCCTTTGCTCTAATGCAGTG-TACAT 20700 Query 54302 GATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 54361 || ||||||||||| || || ||||| || | || ||| |||||||||| ||||| Sbjct 20701 GA-AGACCTATCCCACCAGCTGACTTAGAAATGAGGGCACATTGTTTTAACGTGTCATAA 20759 Query 54362 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 54421 || ||||| || ||||||||| |||| | ||||| || ||| | ||| | || Sbjct 20760 ATTCCCTCAATGCTATCATCCCTCATTGCTATAAGAAAGCATGAAGATAATTGTGGTCGT 20819 Query 54422 CTAGTTCCCGCATTAAATAAG-GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 54480 |||| | || | | | ||| || ||| || || ||||| ||||||| || || || Sbjct 20820 GGAGTTGCTGC-TGAGAAAAGAGTTGGACTTGCATGTGTAAAATATTTTTCTGACAGAAG 20878 Query 54481 ATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 54540 |||||| || | ||||| || || || | ||| ||||||| | || ||||| Sbjct 20879 ATTGTAGGTGTTTATAGCCCCCTCGATGTCTTCTCCATGTATTCCTATAGAAACTCGCAT 20938 Query 54541 TAACATGTGCTGAGGTCTTTC 54561 | ||| ||||| || ||||| Sbjct 20939 GAGCATATGCTGTGGCCTTTC 20959 >seq1613 Length=46735 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||| ||| | || ||| || || | ||| ||||| | || ||||| | Sbjct 40318 CCTCATCTCTAGAAATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCTCGCTTCT 40377 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | |||||| || || ||||| ||||| ||||| || ||||| || || ||||||| Sbjct 40378 TCATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAATATGCCTTCAACAGCAGCAAAGG 40437 Query 24277 CAATAAGTCTTTCTCCATAACCGGC--GCTGTCATG-TATCCACTTTTGAGCCCAATCGG 24333 |||| | | || || | ||| || | || ||||||| | ||||| || | Sbjct 40438 CAATGATACGCTCAGCAAATGTGGCTGACTTGCTTGCAATCCACTGGAGGGCCCAGTCAG 40497 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 ||||||| || ||||| |||| || || ||||||||||| || Sbjct 40498 CCTTCTTCTTCACACAGGGCAGGGTTTCAATAGCATTAAACAG 40540 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 || |||| ||| ||||| || || ||||| || || ||||||||||| || ||||| | | Sbjct 41418 TTGGATAGATCGACTTCCTCAACGGTCCAGAACGAAGCCTCTGCCTTCTTGTACATTTCC 41477 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 ||||| ||| |||| || ||||| || || ||||| Sbjct 41478 CAGATATCAGGATACTGTATTGGGAATATTACAAA 41512 >seq2446 Length=565066 Score = 86.0 bits (94), Expect = 7e-12 Identities = 242/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Minus Query 147331 ATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATTTA 147388 ||||||||| |||| || ||||| || ||| | || | || || | | |||| | | Sbjct 540529 ATGACTCCAGTATTA--CCTATGTTGGCTGAAGCTTGCAAATCAGTGGAAATGGCAATGA 540472 Query 147389 AAAAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGTTC 147448 | |||| ||| |||||||| | || ||||||| || || || || |||||||| | Sbjct 540471 AGAAATGTCCTAACGGAATGTTCTCAGAGATCAAATATGACGGTGAAAGGGTACAAGTGC 540412 Query 147449 ATAAAAATAATAACGAGTTTGCCTTTTTTAGTAGAAACATGAAACCAGTACTCTCTTATA 147508 ||||||| || |||||| | ||| |||| | ||||| || | | ||| Sbjct 540411 ATAAAAAAGGGAATGAGTTTAAATATTTCTCTAGAGCATTAAAACCTGTTATGGCACATA 540352 Query 147509 AAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTAT 147568 |||| | || | || || || |||| |||||||| ||| | || | | | Sbjct 540351 AAGTCAGTCATTTTAAGGATTATTTACCACAAGCATTTCCAAAGGGGACCGATTTGATTC 540292 Query 147569 TGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTACAGC---TCCCGTTTGGAAGTT 147625 | ||| ||||| || | | ||||| | ||| | | ||| | || ||||| | Sbjct 540291 TTGATGCTGAAGTTTTGATGGTAGATGTGAATACAGGAAAGCCTTTGCCATTTGGTACAC 540232 Query 147626 TAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTTGTGTTTGACT 147685 ||||||| || ||| || |||| ||| | | | | ||| ||||||||||||||| Sbjct 540231 TAGGTATCCATAAACAGTCTGAATTCAAAGATGCACAAGTATGTCTGTTTGTGTTTGACT 540172 Query 147686 GTTTGTACT 147694 |||| |||| Sbjct 540171 GTTTATACT 540163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593699520978000