Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq2898 192 5e-44 seq806 113 4e-20 seq1608 86.0 5e-12 >seq2898 Length=111689 Score = 192 bits (212), Expect = 5e-44 Identities = 578/886 (65%), Gaps = 15/886 (2%) Strand=Plus/Plus Query 105613 ACGCCGGTCCAGCCGCGGCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACG 105672 || || ||||| || ||||||||||| || || || || | ||||| || || ||| Sbjct 27512 ACTCCAGTCCAACCACGGCCGTACATAGCTACACCAACGACAATTTTCTTAGGGCTGACT 27571 Query 105673 CCTTGTTTCAGTAACGCATCGACAGCGTAGTGTGTAGTGTATAGCTCTTCCGAGTTCCAA 105732 || || || | | |||| || ||| || ||||| ||| | | |||||| Sbjct 27572 CCCTGAGCCAACAGGAATTTGACACCGAAGTCAGTTGTGTAAGTCTCCTTGGGGTTCCAG 27631 Query 105733 CTTGGCGCGTAGACTGTTGTTTGGTAGCCCAAATCCGTGTTTGACCAAGCCCCTTTAAAA 105792 || |||| | | | ||||| ||| | | |||||||||||| || || || Sbjct 27632 GCGGGAGCGTGCAGGGCAGCTTGGTGGCCAAGAGTGTCGTTTGACCAAGCTCCCTTGAAG 27691 Query 105793 TCGTAACTCATGAGAAATATTTTGCCTAATGACTTTTGCGCTTCGGCGTAGTTTACCACG 105852 ||||| ||||| | || || | | | | ||| || || | ||||| ||| || Sbjct 27692 TCGTAGCTCATCAAGAAGATGTGGTCCATGTACTGCTGAGCCGCTTTGTAGTCTACTACC 27751 Query 105853 GCAATCTTGTCGTAACCCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGGTTTGC 105912 ||||||||| |||| | ||| || || || | |||||| | | || || | Sbjct 27752 TGAATCTTGTCCCAACCAGAGCTGATGGCTGAAGTCAGTTCGTATTTCTTTCCAGTCTTG 27811 Query 105913 GCTTCGAGGTCGTCTAGCATTGCGCGCAGCTCCTCCAACAACAAAATGTATGTTTTGGCG 105972 || || |||| ||||| | | ||| |||| || || | | ||| | | Sbjct 27812 GCAGACAGCTCGTTAAGCATCTCTCTCAGTTCCTTCATCAGCTCGACGTAGAT------G 27865 Query 105973 TCACCGTCCGCATCGC--CCAACGAC-GGGTTAGCCCCTTTGCCGCCCGGAAACTCCCAA 106029 | |||||| || || || | | |||||||| || || || || || |||||||| Sbjct 27866 TGACCGTCATCAGGGCTACCGAGATCAGGGTTAGCGCCCTTACCACCAGGGAACTCCCAG 27925 Query 106030 TCGATGTCTACACCGTCAAAGAATTTCCACACTTGCAGAAATTCCTTAACCGAATCTACA 106089 || ||||| || || |||||||||||||| || || || ||||| || || || || Sbjct 27926 TCAATGTCCACTCCATCAAAGAATTTCCAGGTTTCAAGGAAGTCCTTCACAGAGTCAAC- 27984 Query 106090 AAAACGTTTCTTTTTTCAACATCGT--GCATAAAATAA-AATGGGTCTGATAGAGTCCAG 106146 || || ||| | || ||| | || | | || || ||||| || | || ||||| Sbjct 27985 GAAGCGCTTCCTCTT--AACCTTGTCAGTGAAGAAGAAGAATGGATCAGCCAGGGTCCAA 28042 Query 106147 CCTCCTATTGAAGGAAGAATTTTTAAATGGGGGTTTGCTAATTTTGCCGCCATCAACTGT 106206 || || | ||||| | || || | | || |||| ||| | ||||| |||| Sbjct 28043 CCACCAACGGAAGGTAAGATCTTCAGGTCAGGTCTTGCCTGTTTCAACATCATCAGCTGT 28102 Query 106207 CCAAAATTGCCTTTATACGGCTCGTTCCAAGCGGACACACCTTTTTGGGGTTTTTGTACG 106266 || ||||| || || || || |||||||| | | || ||| ||||| ||||| || | Sbjct 28103 CCGAAATTACCCTTGTAGGGTTCGTTCCAGGACGCCAGACCCTTTTGTGGTTTCTGAAGA 28162 Query 106267 GCGGCCCACGGATCGTGAATGGCAACTTTGAAATCTTCGCGTCCCTTGCACGATCTTTGC 106326 || ||||| || |||||||| | |||||||| || || | || |||| |||| |||| Sbjct 28163 GCTGCCCAAGGGTCGTGAATCGATACTTTGAAGTCCTCCCTGCCACTGCAGGATCGTTGC 28222 Query 106327 AAAGATTCAAAGCTTCCGGGTATCGTTTTGAGGGCGTCGTTTATTCCATCGCCGCCGCAG 106386 | || || ||||| || || ||| | |||||| || ||||| || |||||| Sbjct 28223 AGAGCTTGGAAGCTGCCTTCGATTTCTTTCAAACTGTCGTTGATGCCATCTCCACCGCAG 28282 Query 106387 ATGGGTATGAAACCATACAACAAGTGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGA 106446 || || |||||||| |||| | || | | ||| || | ||| || ||| ||||| Sbjct 28283 ATTGGGATGAAACCGTACAGAAGATGGGTAAGATTCGGGATGGGTACGCGGTCGACGGGG 28342 Query 106447 AAGTTGCGCCCGTACACACCCCACTCAACAAAGTACGCAGCGACAA 106492 || || | ||| || ||||| || || ||||| || | |||| Sbjct 28343 AACTTCCTGGGGTAGACGCCCCATTCGACGAAGTAAGCGCCAACAA 28388 >seq806 Length=81131 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| ||||| ||||| || || || ||| |||||| | Sbjct 48180 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACTATCACACTAGAAGTTGAACCCTCT 48121 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| || || |||||| | ||| ||| ||| Sbjct 48120 GACACAATTGAAAATGTCAAAGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGACCAA 48061 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | ||||| || ||||| ||| |||| ||| ||| || | ||||||||| Sbjct 48060 CAGCGATTGATCTTCGCCGGCAAGCAATTGGAGGATGGGCGAACCTTGTCTGATTACAAT 48001 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||| ||||||||| |||| | || |||| || || Sbjct 48000 ATTCAGAAGGAATCCACTCTTCACTTGGTACTTCGTCTACGTGGTGG 47954 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || ||||| || || | || || |||||||| |||||||| || || ||||||| Sbjct 48867 AACATGCAGATCTTTGTGAAGACTTTGACGGGGAAAACCATAACATTAGAGGTGGAACCC 48808 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | | |||| ||||||| ||||| ||||| | || ||| Sbjct 48807 TCTGATACCATTGAAAACGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCTCCCGAT 48748 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 ||||| ||| | ||||| || || |||||| |||||||| ||| | |||| ||| Sbjct 48747 CAACAGAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGACGCACTCTTTCCGACTAC 48688 Query 29139 AATATTCAGAAGGAATCTACTCTTCA 29164 ||||| |||||||| ||||||||||| Sbjct 48687 AATATCCAGAAGGAGTCTACTCTTCA 48662 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| || || || ||||||||||| ||| |||||| | Sbjct 46098 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTCT 46039 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| || ||||| || | || ||||||| Sbjct 46038 GACACAATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAGGGAATTCCACCAGATCAA 45979 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | || || || || || || || ||||| ||| | ||||||||||| Sbjct 45978 CAAAGATTGATTTTCGCTGGTAAGCAGCTTGAAGACGGACGCACTCTTTCCGATTACAAT 45919 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 ||||| |||||||| || ||||| Sbjct 45918 ATTCAAAAGGAATCAACACTTCA 45896 >seq1608 Length=32450 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || |||||||| || ||||| || ||| ||| ||| || | Sbjct 30304 ATGCAGATTTTCGTAAAGACATTGACTGGAAAAACTATCACCCTTGAAGTGGAGCCTTCC 30363 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| ||||| || || ||||| | ||| || || Sbjct 30364 GATACCATTGAAAACGTAAAGGCTAAAATCCAAGACAAGGAAGGAATTCCCCCTGACCAG 30423 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | ||||||||||| ||||| || || |||||| ||| | |||| || || Sbjct 30424 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACTCTTTCCGACTATAAC 30483 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||||||||| |||||| |||| || || | ||||| || Sbjct 30484 ATTCAGAAGGAATCTACCCTTCACTTGGTCTTGCGTCTGCGAGGTGG 30530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428320469473625