Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2295 158 1e-33 seq1608 104 2e-17 seq2205 102 7e-17 seq806 89.7 4e-13 >seq2295 Length=223346 Score = 158 bits (174), Expect = 1e-33 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 29018 ACCACACACGCCTCAGTCATCACCCGCTGCACAAAGTCGCGGCCCTTGACGAGCAGCACG 29077 ||||| || ||||| | ||||||| ||| || | ||||||||||| || ||| ||||| Sbjct 102165 ACCACGCAGGCCTCGGACATCACCTTCTGTACGTACTCGCGGCCCTTCACCAGCTGCACG 102106 Query 29078 TACTCGCAGCGGTCGTACCAGCGGGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAA 29137 || ||||||| ||| ||||||| ||||| || | ||| ||| |||| || |||||| Sbjct 102105 TAGGCGCAGCGATCGAACCAGCGCGCGTGCTGTTCCCAGGGCACGTCATCATTTTCCCAG 102046 Query 29138 TCCTTCAGACCGCCGTCGCAGCAAAAGCACCGCGTCTTGTCGCCCTGGCCAGTGTAAAAG 29197 || |||| |||||| ||||| | || ||| ||||| || ||||| || ||||| ||| Sbjct 102045 TCTTTCAAACCGCCATCGCAATAGAAACACTTGGTCTTATCCCCCTGACCGGTGTAGAAG 101986 Query 29198 AATCCGGCCTCGGCCAACTCTTCGGGCCGCTGTTTCAACCCGCGGGGCCACTCCGCAAAG 29257 || || |||||||| | || || || || || | || ||||| || ||| Sbjct 101985 AAACCAGCCTCGGCAAGTTCCTCTGGTTTTTGCCGCATGCATCGCGGCCAGTCTTTAAAA 101926 Query 29258 GTGCGCAAACGCGCGGCTTC 29277 ||||||||||||| ||||| Sbjct 101925 CTGCGCAAACGCGCAGCTTC 101906 >seq1608 Length=32450 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | || |||| || | ||||| |||||||||||||| ||||| | Sbjct 29846 CCACCTCGCAGACGCAGGACCAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCAGAG 29787 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||| ||||| ||| | || || || |||||||| || Sbjct 29786 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGTGGG 29727 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| || ||| || || | ||| |||||| ||||| | Sbjct 29726 ATACCTTCTTTGTCTTGAATTTTTGCCTTAACATTCTCGATAGTATCTGAAGGCTCGACT 29667 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||| ||||| || || | |||||| || || || ||||| Sbjct 29666 TCGAGGGTAATTGTCTTACCAGTAAGCGTTTTAACGAAAATCTGCAT 29620 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | | |||| ||||| ||| ||||| || |||||||| ||||| | Sbjct 31442 CCACCTCGCAGACGCAAAACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGAA 31383 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || || ||||||||||| || | ||||| | ||||||||| ||| Sbjct 31382 AGGGTACGCCCATCTTCAAGCTGTTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGA 31323 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | ||| |||||| ||||| | Sbjct 31322 ATTCCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCGATGGTATCAGAAGGCTCGACT 31263 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || || || || || || || || || || || ||||| Sbjct 31262 TCGAGGGTGATAGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 31216 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | | |||| ||||| ||| ||||| || |||||||| ||||| | Sbjct 30302 CCACCACGCAGACGCAAAACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGAA 30243 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || || ||||||||||| || | ||||| | ||||||||| ||| Sbjct 30242 AGAGTGCGTCCATCTTCAAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGA 30183 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | ||| |||||| || || | Sbjct 30182 ATTCCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCGATGGTATCAGAAGGTTCAACT 30123 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||| || || || | || || || || |||||||| Sbjct 30122 TCTAGGGTGATGGTTTTTCCAGTGAGGGTCTTCACGAAAATTTGCAT 30076 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || ||||| | ||| |||| |||| ||| ||||| || || ||||| ||||| Sbjct 31674 GTTGCCACCACGCAGACGGAGTACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTC 31615 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | || || | | || |||||||| ||||| || | ||||| | ||||||||| Sbjct 31614 AGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGG 31555 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 ||| | ||||||||||| ||| || || || | ||| |||||| ||||| Sbjct 31554 GGGAATTCCTTCCTTGTCTTGGATTTTAGCCTTAACGTTTTCGATGGTATCAGATGGCTC 31495 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | ||| || || || || || || || || || || || ||||| Sbjct 31494 GACTTCGAGGGTGATAGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 31444 >seq2205 Length=656796 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 || || |||| |||||||||||||| || | |||||| |||||||| ||||||||||| Sbjct 546108 TTACCTCCTCTCAGCCTGAGCACCAAGTGAAGAGTGGATTCCTTTTGGATGTTATAGTCT 546167 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 | || || || | || |||| |||||| || || | ||||| | |||||||| Sbjct 546168 GAAAGAGTGCGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGC 546227 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | ||| || ||||| ||| ||| || || | | | ||| || | |||| Sbjct 546228 GGAATGCCCTCTTTGTCCTGGATTTTTGCCTTTACATTCTCAATAGTGTCTGAAGCCTCC 546287 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | ||| |||||||| || || | ||||| || || || |||||| Sbjct 546288 ACCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATCTGCATT 546338 >seq806 Length=81131 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | ||| |||||||| || || ||||| || | Sbjct 48182 CCACCACGCAGACGAAGTACCAAGTGGAGAGTTGACTCCTTCTGGATATTATAATCAGAA 48241 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| | ||||||||| || | || |||| ||||||||| ||| Sbjct 48242 AGAGTGCGGCCATCCTCTAACTGTTTGCCTGCGAAGATCAGTCGCTGCTGGTCTGGGGGA 48301 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTG--TTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | |||||||| || | | ||||| ||| || | | | || ||| ||||| Sbjct 48302 ATACCTTCCTTATC--CTGTATTTTGGCTTTGACATTTTCAATTGTGTCAGACGGCTCAA 48359 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||| | || || || || || ||||| ||||| || |||||||||||| Sbjct 48360 CTTCTAAAGTTATTGTTTTACCAGTTAAAGTTTTTACGAATATTTGCATT 48409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422243889805100