Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq2898 212 5e-50 seq806 116 3e-21 seq1608 95.1 1e-14 seq2205 93.3 3e-14 >seq2898 Length=111689 Score = 212 bits (234), Expect = 5e-50 Identities = 581/884 (66%), Gaps = 11/884 (1%) Strand=Plus/Plus Query 97380 ACGCCGGTCCAGCCGCGGCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACG 97439 || || ||||| || ||||||||||| || || || || | ||||| || || ||| Sbjct 27512 ACTCCAGTCCAACCACGGCCGTACATAGCTACACCAACGACAATTTTCTTAGGGCTGACT 27571 Query 97440 CCTTGTTCCAGTAACGCATCGACAGCGTAATGTGTAGTGTACAGCTCTTCCGAGTTCCAA 97499 || || ||| | | |||| || | | || ||||| ||| | | |||||| Sbjct 27572 CCCTGAGCCAACAGGAATTTGACACCGAAGTCAGTTGTGTAAGTCTCCTTGGGGTTCCAG 27631 Query 97500 CTTGGCGCGTAGACTGTTGTTTGGTAGCCCAAATCCGTGTTTGACCAAGCCCCTTTAAAA 97559 || |||| | | | ||||| ||| | | |||||||||||| || || || Sbjct 27632 GCGGGAGCGTGCAGGGCAGCTTGGTGGCCAAGAGTGTCGTTTGACCAAGCTCCCTTGAAG 27691 Query 97560 TCGTAAGTCATGAGAAATATTTTGTCTAATGACTTTTGCGCTTCGGCGTAGTTTACCACG 97619 ||||| |||| | || || | ||| | ||| || || | ||||| ||| || Sbjct 27692 TCGTAGCTCATCAAGAAGATGTGGTCCATGTACTGCTGAGCCGCTTTGTAGTCTACTACC 27751 Query 97620 GCAATCTTGTCGTAGCCCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGGTTTGC 97679 ||||||||| | || | ||| || || || | |||||| | | || || | Sbjct 27752 TGAATCTTGTCCCAACCAGAGCTGATGGCTGAAGTCAGTTCGTATTTCTTTCCAGTCTTG 27811 Query 97680 ACTTCGAGGTCGTCTAGCATTTCGCGCAGCTCATCCAACAACAGAATGTATGTTTTGGCG 97739 | || |||| ||||| || | ||| || | || || | | ||| | | || Sbjct 27812 GCAGACAGCTCGTTAAGCATCTCTCTCAGTTCCTTCATCAGCTCGACGTAGATGTGACCG 27871 Query 97740 TCACGCTCCGCATCGCCCAGCGACGGGTTAGCCCCTTTGCCGCCCGGAAATTCCCAATCG 97799 ||| || | || || |||||||| || || || || || || ||||| || Sbjct 27872 TCA---TCAGGGCTACCGAGATCAGGGTTAGCGCCCTTACCACCAGGGAACTCCCAGTCA 27928 Query 97800 ACGTCGACACCATCAAAAAATTTCCACACTTGCAAAAATTCCTTAACCGACTCTACAAAA 97859 | ||| || |||||||| |||||||| || | || ||||| || || || || || Sbjct 27929 ATGTCCACTCCATCAAAGAATTTCCAGGTTTCAAGGAAGTCCTTCACAGAGTCAACGAAG 27988 Query 97860 ACGTTTCTTTTTTCAAC---GTC-GTGCATGAAATAGAACGGGTCCGACAGAGTCCAGCC 97915 || ||| | || ||| ||| ||| | ||| |||| || || | ||| ||||| || Sbjct 27989 -CGCTTCCTCTT--AACCTTGTCAGTGAA-GAAGAAGAATGGATCAGCCAGGGTCCAACC 28044 Query 97916 TCCTATTGAAGGAAGAATTTTTAGATGTGGGTTTGCTAATTTCGCCGCCATCAATTGTCC 97975 || | ||||| | || || || | || |||| |||| | ||||| ||||| Sbjct 28045 ACCAACGGAAGGTAAGATCTTCAGGTCAGGTCTTGCCTGTTTCAACATCATCAGCTGTCC 28104 Query 97976 AAAATTGCCTTTGTACGGTTCGTTCCAAGCGGACACGCCCTTTTGGGGTTTTTGTACGGC 98035 ||||| || ||||| ||||||||||| | | || |||||||| ||||| || | || Sbjct 28105 GAAATTACCCTTGTAGGGTTCGTTCCAGGACGCCAGACCCTTTTGTGGTTTCTGAAGAGC 28164 Query 98036 GGCCCACGGATCGTGGATGGCAACTTTGAAATCTTCGCGTCCCCTGCACGATCGTTGCAG 98095 ||||| || ||||| || | |||||||| || || | || ||||| ||||||||||| Sbjct 28165 TGCCCAAGGGTCGTGAATCGATACTTTGAAGTCCTCCCTGCCACTGCAGGATCGTTGCAG 28224 Query 98096 AGCTTCAAAACTTCCGGGTATTGTTTTGAGGGCGTCGTTTATTCCATCGCCACCGCAGAT 98155 ||||| || || || ||| ||| | |||||| || ||||| ||||||||||| Sbjct 28225 AGCTTGGAAGCTGCCTTCGATTTCTTTCAAACTGTCGTTGATGCCATCTCCACCGCAGAT 28284 Query 98156 GGGTATGAAACCGTACAACAAGTGCGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAA 98215 || ||||||||||||| | || | | ||| || | ||| || ||| ||||| || Sbjct 28285 TGGGATGAAACCGTACAGAAGATGGGTAAGATTCGGGATGGGTACGCGGTCGACGGGGAA 28344 Query 98216 GCTGCGCCCGTACACACCCCACTCGACAAAGTACGCAGCGACAA 98259 | | ||| || ||||| ||||| ||||| || | |||| Sbjct 28345 CTTCCTGGGGTAGACGCCCCATTCGACGAAGTAAGCGCCAACAA 28388 >seq806 Length=81131 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| ||||| ||||| || || || ||| |||||| | Sbjct 48180 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACTATCACACTAGAAGTTGAACCCTCT 48121 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| |||||| || || |||||| | ||| ||| ||| Sbjct 48120 GACACAATTGAAAATGTCAAAGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGACCAA 48061 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | ||||| || ||||| |||||||| ||| ||| || | ||||||||| Sbjct 48060 CAGCGATTGATCTTCGCCGGCAAGCAATTGGAGGATGGGCGAACCTTGTCTGATTACAAT 48001 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| |||||||| ||||||||| |||| | || |||| || || Sbjct 48000 ATTCAGAAGGAATCCACTCTTCACTTGGTACTTCGTCTACGTGGTGG 47954 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| || || | || || |||||||| |||||||| || || ||||||| Sbjct 48867 AACATGCAGATCTTTGTGAAGACTTTGACGGGGAAAACCATAACATTAGAGGTGGAACCC 48808 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | | | || ||||||| ||||| ||||| | || ||| Sbjct 48807 TCTGATACCATTGAAAACGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCTCCCGAT 48748 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 ||||| ||| | ||||| || || ||||||||||||||| ||| | |||| ||| Sbjct 48747 CAACAGAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGACGCACTCTTTCCGACTAC 48688 Query 25212 AATATTCAAAAGGAATCTACTCTTCA 25237 ||||| || ||||| ||||||||||| Sbjct 48687 AATATCCAGAAGGAGTCTACTCTTCA 48662 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| || || || ||||||||||| ||| |||||| | Sbjct 46098 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTCT 46039 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| |||||| || ||||| || | || ||||||| Sbjct 46038 GACACAATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAGGGAATTCCACCAGATCAA 45979 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || || || || || || | ||||| ||| | ||||||||||| Sbjct 45978 CAAAGATTGATTTTCGCTGGTAAGCAGCTTGAAGACGGACGCACTCTTTCCGATTACAAT 45919 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 |||||||||||||| || ||||| Sbjct 45918 ATTCAAAAGGAATCAACACTTCA 45896 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||||||| | ||||| || || || ||||| || || ||| || || | Sbjct 48409 AATGCAAATATTCGTAAAAACTTTAACTGGTAAAACAATAACTTTAGAAGTTGAGCCGTC 48350 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || |||| ||||| ||||| |||||| | ||| ||| || Sbjct 48349 TGACACAATTGAAAATGTCAAAGCCAAAATACAGGATAAGGAAGGTATTCCCCCAGACCA 48290 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || |||| ||||| || |||||||| || || ||| | ||| | | ||||| || Sbjct 48289 GCAGCGACTGATCTTCGCAGGCAAACAGTTAGAGGATGGCCGCACTCTTTCTGATTATAA 48230 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| || ||||| || ||||| ||| |||| Sbjct 48229 TATCCAGAAGGAGTCAACTCTCCACTTGGT 48200 >seq1608 Length=32450 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | ||||| | || || || || |||||| |||| || || || Sbjct 29620 ATGCAGATTTTCGTTAAAACGCTTACTGGTAAGACAATTACCCTCGAAGTCGAGCCTTCA 29679 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| ||||||| || ||||||||| | || ||| || Sbjct 29680 GATACTATCGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGTATCCCACCAGACCAG 29739 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| || |||||||| ||||| || |||||||| || | | || ||||| Sbjct 29740 CAAAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAAC 29799 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||| || |||||| |||| | || | ||||| || Sbjct 29800 ATTCAAAAGGAATCCACCCTTCACCTGGTCCTGCGTCTGCGAGGTGG 29846 >seq2205 Length=656796 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| | ||||| ||||||| || ||||| ||| ||| ||| | | Sbjct 546338 AATGCAGATCTTCGTAAAAACCCTGACGGGTAAGACCATCACCCTCGAGGTGGAGGCTTC 546279 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || | ||| |||||| || ||||| || | || ||| || Sbjct 546278 AGACACTATTGAGAATGTAAAGGCAAAAATCCAGGACAAAGAGGGCATTCCGCCAGACCA 546219 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | |||||||| || || ||||| ||||||||| | ||| | | || || || Sbjct 546218 GCAACGTCTTATCTTCGCCGGTAAACAGTTGGAAGATGGCCGCACTCTTTCAGACTATAA 546159 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTG 25244 || ||||||||||| ||||||||| ||||| Sbjct 546158 CATCCAAAAGGAATCCACTCTTCACTTGGTG 546128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410781905406650