Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq806 145 1e-29 seq1608 104 4e-17 >seq806 Length=81131 Score = 145 bits (160), Expect = 1e-29 Identities = 181/247 (73%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || |||| ||| | || |||||||| || ||| ||||| |||| | | Sbjct 48636 ATGCAAATTTTCGTAAAAACATTGACTGGCAAAACCATCACTTTAGAGGTTGAGCCTTCT 48577 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| ||| | ||| ||||| || ||||| || ||||| ||||||||||| Sbjct 48576 GACACAATCGAAAATGTTAAAGCCAAAATCCAGGATAAGGAGGGTATCCCACCTGATCAG 48517 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || ||||| || || ||| | || |||||| ||| || ||| Sbjct 48516 CAACGATTGATCTTTGCCGGCAAACAGTTGGAAGATGGACGCACATTATCAGACTACAAT 48457 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 || ||||||||||| || | || || || || ||||| || || || || ||| |||| Sbjct 48456 ATCCAAAAAGAATCTACCCTTCACTTAGTATTGCGTTTGCGCGGAGGAATGCAAATATTC 48397 Query 124778 ATAAAAA 124784 |||||| Sbjct 48396 GTAAAAA 48390 Score = 132 bits (146), Expect = 7e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||||||| |||| || |||| || ||||| |||||| |||| |||| | Sbjct 48409 AATGCAAATATTCGTAAAAACTTTAACTGGTAAAACAATAACTTTAGAAGTTGAGCCGTC 48350 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| |||||| ||| | ||| ||||| || ||||| |||||||| || || || || Sbjct 48349 TGACACAATTGAAAATGTCAAAGCCAAAATACAGGATAAGGAAGGTATTCCCCCAGACCA 48290 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || || ||||| ||||| ||||||||| | || || | |||||||| Sbjct 48289 GCAGCGACTGATCTTCGCAGGCAAACAGTTAGAGGATGGCCGCACTCTTTCTGATTATAA 48230 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || || |||||| | || ||||| | ||| | || |||||||| Sbjct 48229 TATCCAGAAGGAGTCAACTCTCCACTTGGTACTTCGTCTGCGTGGTGGTAT 48179 Score = 127 bits (140), Expect = 3e-24 Identities = 171/237 (72%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || |||| || ||||| || || |||| ||||| | | Sbjct 46098 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTCT 46039 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| ||||||||||| ||||| || || ||||| |||||| Sbjct 46038 GACACAATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAGGGAATTCCACCAGATCAA 45979 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | ||||| || || || || | || || | || || | ||||| ||| Sbjct 45978 CAAAGATTGATTTTCGCTGGTAAGCAGCTTGAAGACGGACGCACTCTTTCCGATTACAAT 45919 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAA 124774 |||||||| |||||||| | ||||| ||| || | || ||||||| || |||||| Sbjct 45918 ATTCAAAAGGAATCAACACTTCATTTAGTTCTAAGGTTGAGAGGTGGAATGTAAAAA 45862 Score = 118 bits (130), Expect = 2e-21 Identities = 193/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || || ||||| ||||| ||||| | ||| | | Sbjct 48864 ATGCAGATCTTTGTGAAGACTTTGACGGGGAAAACCATAACATTAGAGGTGGAACCCTCT 48805 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || ||||| || |||||||||||||| ||||| || || || ||||| Sbjct 48804 GATACCATTGAAAACGTTAAAGCA-AAAATTCAAGATAAGGAAGGCATTCCTCCCGATCA 48746 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || | || || || ||||||||||| || ||| | || || | || || || Sbjct 48745 ACAGAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGACGCACTCTTTCCGACTACAA 48686 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 ||| || || || || ||| | ||| | || | ||| | |||||||||| ||| || Sbjct 48685 TATCCAGAAGGAGTCTACTCTTCATCTCGTGCTGCGTCTCAGAGGTGGTATGCAAATTTT 48626 Query 124777 CATAAAA--ATTGATTGTAAATAAATATCACT 124806 | ||||| ||||| || || || |||||| Sbjct 48625 CGTAAAAACATTGACTGGCAA-AACCATCACT 48595 >seq1608 Length=32450 Score = 104 bits (114), Expect = 4e-17 Identities = 187/270 (69%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || ||||| || || |||| ||||| | | Sbjct 30076 ATGCAAATTTTCGTGAAGACCCTCACTGGAAAAACCATCACCCTAGAAGTTGAACCTTCT 30135 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || || || ||||| || ||||| || || || || || Sbjct 30136 GATACCATCGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCAG 30195 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| || || || ||||| | || ||| | || || | || || || Sbjct 30196 CAGCGTCTTATCTTCGCCGGCAAACAGCTTGAAGATGGACGCACTCTTTCTGACTACAAC 30255 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 ||||| ||||| || ||| ||||||||||||| ||| | || |||||||| | | ||| Sbjct 30256 ATTCAGAAAGAGTCGACTCTGCATTTGGTTTTGCGTCTGCGTGGTGGTATGCAGATTTTC 30315 Query 124778 ATAA--AAATTGATTGTAAATAAATATCAC 124805 ||| | ||||| || ||| || |||||| Sbjct 30316 GTAAAGACATTGACTGGAAA-AACTATCAC 30344 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || || | || || |||||||| || | || |||| || Sbjct 29391 AATGCAGATTTTTGTGAAAACCTTGACGGGTAAAACTATCACCCTTGAAGTTGAGCCATC 29450 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| ||||| ||||||||||| |||||||| || || || ||||| Sbjct 29451 CGACACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGATCA 29510 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || || || ||||| || ||||| || |||| ||| | || || || Sbjct 29511 GCAGCGACTGATCTTCGCTGGAAAGCAGTTAGAAGACGGTCGCACACTGTCTGACTACAA 29570 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| || | || | ||| | ||| | || |||||||| Sbjct 29571 CATCCAAAAAGAATCTACGCTTCACCTTGTTCTGCGTCTCCGTGGTGGTAT 29621 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || |||||||| ||| | || | || | | Sbjct 30988 ATGCAAATTTTCGTGAAGACCCTCACTGGTAAAACTATCACTCTTGAAGTGGAGCCTTCT 31047 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| |||| || || || || || || || || || || || || Sbjct 31048 GACACTATTGAGAATGTAAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 31107 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| || || || || || | || ||| |||| || | || || || Sbjct 31108 CAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 31167 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| || ||||||||||||||||| ||| | ||||||||||| Sbjct 31168 ATTCAGAAAGAGTCTACTTTGCATTTGGTTTTGCGTCTGCGAGGTGGTAT 31217 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||||||||| ||||||||||| ||||| || || |||||||| || ||||| || || Sbjct 29704 AAAATTCAAGACAAAGAAGGTATCCCACCAGACCAGCAAAGGCTGATCTTTGCCGGCAAG 29763 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | || ||| | || || | || || || |||||||| ||||| || | || Sbjct 29764 CAGCTGGAAGATGGGCGCACCCTCTCTGACTACAACATTCAAAAGGAATCCACCCTTCAC 29823 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||| | ||| | ||||||||||| Sbjct 29824 CTGGTCCTGCGTCTGCGAGGTGGTAT 29849 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || |||||||| | || || |||||||| || | || | || | Sbjct 30304 ATGCAGATTTTCGTAAAGACATTGACTGGAAAAACTATCACCCTTGAAGTGGAGCCTTCC 30363 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || |||| ||||| ||||| || ||||| || || ||||| || Sbjct 30364 GATACCATTGAAAACGTAAAGGCTAAAATCCAAGACAAGGAAGGAATTCCCCCTGACCAG 30423 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| ||||| || || || | || ||| | || || | || ||||| Sbjct 30424 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACTCTTTCCGACTATAAC 30483 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || | || ||||| || ||| | ||||||||||| Sbjct 30484 ATTCAGAAGGAATCTACCCTTCACTTGGTCTTGCGTCTGCGAGGTGGTAT 30533 Score = 87.8 bits (96), Expect = 3e-12 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || ||||| || ||| | || | || | | Sbjct 30532 ATGCAGATTTTCGTGAAGACCCTCACTGGTAAAACCATCACTCTTGAAGTGGAGCCTTCT 30591 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || |||||||||||||| || || || || || || Sbjct 30592 GACACTATTGAGAATGTGAAAGCTAAGATTCAAGATAAAGAGGGAATTCCCCCAGACCAG 30651 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| ||||| || || || | || ||| | || || | ||||| || Sbjct 30652 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGGCGTACCCTTTCTGATTACAAC 30711 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || |||||||| || | || ||||| | ||| | ||||||||||| ||| || Sbjct 30712 ATCCAGAAAGAATCTACCCTTCACTTGGTCCTGCGTCTGCGAGGTGGTATGCAAATTT 30769 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || || |||||||| || | || | || | | Sbjct 31216 ATGCAGATTTTCGTGAAGACCTTGACTGGAAAAACTATCACCCTCGAAGTCGAGCCTTCT 31275 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || || || ||||| || ||||| || || || || || Sbjct 31276 GATACCATCGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCAG 31335 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| || || || ||||| | || ||| | || || | || || || Sbjct 31336 CAGCGTCTTATCTTCGCTGGCAAACAGCTTGAAGATGGGCGTACCCTTTCTGACTACAAC 31395 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| || ||| ||||||||||||| ||| | ||||||||||| Sbjct 31396 ATTCAGAAAGAGTCGACTCTGCATTTGGTTTTGCGTCTGCGAGGTGGTAT 31445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755427906480000