Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq806 105 1e-17 seq1331 91.5 2e-13 >seq806 Length=81131 Score = 105 bits (116), Expect = 1e-17 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||||||||| | |||| || ||||| | || ||||| ||| || ||||| ||||| Sbjct 45870 TTCCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTTTTGA-ATATTGTAATCG 45928 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 |||||||| | | || || | || || ||||| |||||||||||||| ||||| || Sbjct 45929 GAAAGAGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAAATCAATCTTTGTTGATCTGGT 45988 Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227 |||||||| ||||| ||||| || || || ||| Sbjct 45989 GGAATTCCCTCTTTGTCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCAGAGGGTTCA 46048 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||||| ||| || |||||||| ||||| ||||| | || |||||||| Sbjct 46049 ACTTCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 46098 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | || | ||| | |||||| || || ||||| || || ||| Sbjct 48638 CCACCTCTGAGACGCAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAA 48697 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || ||||||||||| || || |||||||| || ||||| |||||| Sbjct 48698 AGAGTGCGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGGA 48757 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 48758 ATGCCTTCCTTATCTTG 48774 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/211 (68%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||| || | ||| || || || ||||||||||| |||||||| | || ||| || Sbjct 48199 TACCAAGTGGAGAGTTGACTCCTTCTGGATATTATAATCAGAAAGAGTGCGGCCATCCTC 48258 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| ||||| || || || |||| || ||||| || || ||||| ||||| ||||| || Sbjct 48259 TAACTGTTTGCCTGCGAAGATCAGTCGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTG 48318 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 || || || || ||||||| || |||||||| Sbjct 48319 TATTTTGGCTTTGACATTTTCAATTGTGTCAGACGGCTCAACTTCTAAAGTTATTGTTTT 48378 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||| ||||| ||||| | ||||||||||||| Sbjct 48379 ACCAGTTAAAGTTTTTACGAATATTTGCATT 48409 >seq1331 Length=769891 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 10499 AGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTC 10558 |||||| || ||||| |||||||| ||||||||||| || || | | || || ||||| Sbjct 315294 AGCTGGTGTTATTGATGAAGATTACAGAGGAAATGTCGGTGTTGTTATCTTCAACCATTC 315353 Query 10559 TAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618 | || ||| ||| ||| || | ||| ||||| || | ||||| || ||||||| ||| Sbjct 315354 TGATTCAGACTTTGAAATCAAGAAAGGCGATAGGATTGCCCAATTGATCTGTGAAAGAAT 315413 Query 10619 TTTATATCCTAAAATGTTAAAAGTCGATAGTTTATCAGAAACAAAAAGATCTGATTTTGG 10678 | || ||| | | | | || | | | |||||||| ||||| | || ||| Sbjct 315414 CTACTACCCTGTACTCAAAGAGGTTACAAATCTCTCAGAAACCAAAAGGGCAGAGGGTGG 315473 Query 10679 TTTTGGATCTACTGG 10693 ||||||||| || || Sbjct 315474 TTTTGGATCAACAGG 315488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743498750112000