Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1608 104 2e-17 seq2205 95.1 8e-15 >seq1608 Length=32450 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | ||| ||| ||||| ||||| |||||||| Sbjct 30986 CCACCACGCAGACGCAAAACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCGGAA 30927 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||| || ||||| || || ||||||||||| ||| Sbjct 30926 AGGGTACGCCCATCTTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGGGGA 30867 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | || | ||| | | ||| || Sbjct 30866 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATTTTCAATGGTATCAGATGGTTCAACT 30807 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||| || ||||| || ||||| || || ||||| Sbjct 30806 TCTAAGGTGATGGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 30760 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| || |||||| |||||||| ||||||||||| || Sbjct 31214 CCACCTCGCAGACGCAAAACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGAA 31155 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| ||||| || || ||||||||||| ||| Sbjct 31154 AGAGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGA 31095 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||||| || | || | || | | || || Sbjct 31094 ATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCCACT 31035 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| ||||| || ||||| || ||||| || || ||||| Sbjct 31034 TCAAGAGTGATAGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 30988 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| || ||||| | ||| |||||| || ||||||||||| ||| Sbjct 29618 CCACCACGGAGACGCAGAACAAGGTGAAGCGTAGATTCTTTTTGGATGTTGTAGTCAGAC 29559 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || |||||||| || ||||| || || |||||||| || ||| Sbjct 29558 AGTGTGCGACCGTCTTCTAACTGCTTTCCAGCGAAGATCAGTCGCTGCTGATCTGGGGGA 29499 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || || ||||| || ||| || |||| || | || | |||| | || || Sbjct 29498 ATGCCTTCTTTGTCTTGAAT-TTTGGCTTTTACATTTTCAATAGTGTCGGATGGCTCAAC 29440 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| ||||| || || | ||||||||||| |||||||| Sbjct 29439 TTCAAGGGTGATAGTTTTACCCGTCAAGGTTTTCACAAAAATCTGCAT 29392 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | ||| ||| ||||| ||||| |||||||| Sbjct 30074 CCACCTCGCAGACGCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCGGAA 30015 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||| || || ||||||||||| ||| Sbjct 30014 AGGGTACGCCCATCTTCAAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGGTCTGGGGGA 29955 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||||| || | || | || | | || || Sbjct 29954 ATTCCCTCCTTATCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCAACT 29895 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||| || || | || ||||| || |||||||| Sbjct 29894 TCAAGAGTGATGGTTTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 29848 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| |||| ||| | ||| ||||||||| |||||||| || || Sbjct 30758 CCACCTCGCAGACGCAGGACCAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAATCAGAA 30699 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || || || || ||||||||||| ||| Sbjct 30698 AGGGTACGCCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 30639 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||| || || ||| || ||||| | || | || | || | | || || Sbjct 30638 ATTCCCTCTTTATCTTGAATC-TTAGCTTTCACATTCTCAATAGTGTCAGAAGGCTCCAC 30580 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||| || ||||| || ||||| || |||||||| Sbjct 30579 TTCAAGAGTGATGGTTTTACCAGTGAGGGTCTTCACGAAAATCTGCAT 30532 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| || | ||| |||||||| ||||||||||| || Sbjct 30302 CCACCACGCAGACGCAAAACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGAA 30243 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | ||| ||||| ||||| || || ||||||||||| ||| Sbjct 30242 AGAGTGCGTCCATCTTCAAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGA 30183 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | || | ||| | | ||| || Sbjct 30182 ATTCCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCGATGGTATCAGAAGGTTCAACT 30123 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||| || ||||| || ||||| || || ||||| Sbjct 30122 TCTAGGGTGATGGTTTTTCCAGTGAGGGTCTTCACGAAAATTTGCAT 30076 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | |||| |||||||| ||||||||||| || Sbjct 31670 CCACCACGCAGACGGAGTACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAA 31611 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| ||||| || || ||||||||||| ||| Sbjct 31610 AGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGA 31551 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| || || ||| | | | || | ||| | | ||||| Sbjct 31550 ATTCCTTCCTTGTCTTGGATTTTAGCCTTAACGTTTTCGATGGTATCAGATGGCTCGACT 31491 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| ||||| || || | || ||||| || |||||||| Sbjct 31490 TCGAGGGTGATAGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 31444 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| || | ||| |||||||| ||||||||||| || Sbjct 31442 CCACCTCGCAGACGCAAAACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGAA 31383 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||| ||||| ||||| || || ||||||||||| ||| Sbjct 31382 AGGGTACGCCCATCTTCAAGCTGTTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGA 31323 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | || | ||| | | ||||| Sbjct 31322 ATTCCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCGATGGTATCAGAAGGCTCGACT 31263 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| ||||| || || | || ||||| || |||||||| Sbjct 31262 TCGAGGGTGATAGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 31216 >seq2205 Length=656796 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | |||||| ||||||| ||| | ||| ||| || || ||||| ||||| || Sbjct 546111 CCTCCTCTCAGCCTGAGCACCAAGTGAAGAGTGGATTCCTTTTGGATGTTATAGTCTGAA 546170 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||||||| || || ||||| || || || |||||||| || Sbjct 546171 AGAGTGCGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGGA 546230 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||| ||||| || ||| ||||| || | || | || | | || || Sbjct 546231 ATGCCCTCTTTGTCCTGGATTTTTGCCTTTACATTCTCAATAGTGTCTGAAGCCTCCACC 546290 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || || ||||| || ||||||||||| Sbjct 546291 TCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATCTGCAT 546337 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | |||||| ||||| | ||| | || ||| ||||| ||||||||||| || Sbjct 548975 CCTCCTCTCAGCCTAAGCACTAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGAG 548916 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || |||||||| || || ||||| || || || |||||||| | |||| Sbjct 548915 AGTGTGCGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGGG 548856 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| |||||| ||| | || | || | || | | || || Sbjct 548855 -ATGCCCTCTTTGTCCTGAATCTTTGCCTTCACATTCTCAATAGTGTCCGAAGCCTCCAC 548797 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || || ||||| || ||||| ||||| Sbjct 548796 CTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATTTGCAT 548749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323060286116000