Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2898 214 1e-50 seq2295 210 2e-49 seq2205 122 7e-23 seq806 114 1e-20 seq1608 95.1 1e-14 >seq2898 Length=111689 Score = 214 bits (236), Expect = 1e-50 Identities = 639/977 (65%), Gaps = 12/977 (1%) Strand=Plus/Plus Query 6371 ATCTCCCTGTAGTCCACCACACCCTCCTCCCAAGTGCCTTTCACTTTACCCGTCGCCACC 6430 ||||| ||||||||||| ||||| |||| ||| || ||||| || || || || || Sbjct 27419 ATCTCTCTGTAGTCCACTACACCATCCTGCCAGGTACCTTTGACCGGGCCAGTGGCTACA 27478 Query 6431 CCACTAAACAGATTGTTGTTCGTGTAATTCGTCACACCCGACCACCCCCTGCCGTACATA 6490 ||| | || | || || ||||| | || || | ||| || | |||||||||| Sbjct 27479 CCAGTGAATGGGTTTCCGTCTTTGTAACCGTTGACTCCAGTCCAACCACGGCCGTACATA 27538 Query 6491 GCCACCCCCACCACCAACTTGCCACTGTTCACACTCTGGTTCAACA--AACGCCTCAACG 6548 || || || || || | || | | | || | ||| ||||| || || || Sbjct 27539 GCTACACCAACGACAATTTTCTTAGGGCTGACTCCCTGAGCCAACAGGAATTTGACACCG 27598 Query 6549 CAAAGTCTGTGGTGTAGTTTTCGTGGGTTTTCCACGACGGTGGATACAGAGGTGCGTGGT 6608 ||||| || ||||| | || | || ||||| | || | | ||| | || |||| Sbjct 27599 --AAGTCAGTTGTGTAAGTCTCCTTGGGGTTCCAGGCGGGAGCGTGCAGGGCAGCTTGGT 27656 Query 6609 AGCCCAGATCCGTCATC-GACCACGCACCCTTGTAATCGTAGTTCATCACGAAAATGTAG 6667 ||| ||| ||| | ||||| || |||||| | |||||| |||||| ||| |||| | Sbjct 27657 GGCCAAGAGT-GTCGTTTGACCAAGCTCCCTTGAAGTCGTAGCTCATCAAGAAGATGTGG 27715 Query 6668 TCGAGATACTGTTGGCACTGTTTGTAGTCGACCACGTCTATCTTGTCGTAACCACCGCTG 6727 || | ||||| || | ||||||||| || || | |||||||| ||||| |||| Sbjct 27716 TCCATGTACTGCTGAGCCGCTTTGTAGTCTACTACCTGAATCTTGTCCCAACCAGAGCTG 27775 Query 6728 ATGGCGCTCGTCAACTGCAATCTCCGGCCCGTCTTCTCCTCCAGCTCGTCCAACATTTGT 6787 ||||| |||| | || || || ||||| | |||||||| | ||| | | Sbjct 27776 ATGGCTGAAGTCAGTTCGTATTTCTTTCCAGTCTTGGCAGACAGCTCGTTAAGCATCTCT 27835 Query 6788 CTCAAATCGCTCAGCAGCTGTACATAGGTGTACTTGTCGGTGTCAGCATCGCCCAACTTG 6847 |||| || ||| ||||| || ||| ||| ||| |||| || | | Sbjct 27836 CTCAGTTCCTTCATCAGCTCGACGTAGATGTGACCGTCA---TCAGGGCTACCGAGATCA 27892 Query 6848 TCGTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACTTC 6907 ||| || ||||| || || || |||||||||||||| |||||||| || || || ||| Sbjct 27893 GGGTTAGCGCCCTTACCACCAGGGAACTCCCAGTCAATGTCCACTCCATCAAAGAATTTC 27952 Query 6908 CACGTCTCCAGAAACTCGCGCACGCTCTGCACAAACACCCGACGCTTGGCGGAGTC-GTG 6966 || || || || || || ||| | || || | | ||| | ||| ||| Sbjct 27953 CAGGTTTCAAGGAAGTCCTTCACAGAGTCAACGAAGCGCTTCCTCTTAACCTTGTCAGTG 28012 Query 6967 CATCTTGTAGAAGGGGTCGCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAGTCAGATT 7026 | | |||| || || || ||||| || || | ||| |||| || |||| | Sbjct 28013 AAGAA-GAAGAATGGATCAGCCAGGGTCCAACCACCAACGGAAGGTAAGATCTTCAGGTC 28071 Query 7027 GGGGTTGTGGTGTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCTCGTCGTA 7086 || | ||||| | ||||||||| || ||||||||||| || || |||| | Sbjct 28072 AGGTCTTGCCTGTTTCAACATCATCAGCTGTCCGAAATTACCCTTGTAGGGTTCGTTCCA 28131 Query 7087 CGCCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACTCACTTT 7146 | | ||| |||||||||||||||||| | || |||| ||||| || ||||| Sbjct 28132 GGACGCCAGACCCTTTTGTGGTTTCTGAAGAGCTGCCCAAGGGTCGTGAATCGATACTTT 28191 Query 7147 GAAATCGTCTCGGCCCGCGCACGATCTTTGCAACGCTTCAAACGACCCCGGCACCTGTTT 7206 ||| || || | ||| ||| |||| ||||| |||| || || | | ||| Sbjct 28192 GAAGTCCTCCCTGCCACTGCAGGATCGTTGCAGAGCTTGGAAGCTGCCTTCGATTTCTTT 28251 Query 7207 CAAGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAAATGGCT 7266 ||| |||||||| || ||||| ||||| || || | || |||||||| | |||| | Sbjct 28252 CAAACTGTCGTTGATGCCATCTCCACCGCAGATTGGGATGAAACCGTACAGAAGATGGGT 28311 Query 7267 GAGATTGGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCGTACACACCCCACTCCAC 7326 ||||| || | ||| || ||| |||| |||| || ||| || ||||| || || Sbjct 28312 AAGATTCGGGATGGGTACGCGGTCGACGGGGAACTTCCTGGGGTAGACGCCCCATTCGAC 28371 Query 7327 AAAGTACGCCGCCACCA 7343 ||||| | ||||| || Sbjct 28372 GAAGTAAG-CGCCAACA 28387 >seq2295 Length=223346 Score = 210 bits (232), Expect = 2e-49 Identities = 338/483 (70%), Gaps = 16/483 (3%) Strand=Plus/Plus Query 13188 GAAGCTGCTCGAGTCAAGAGTTTTCACAACTGGCCCCGTTGTATGAAGCAGAGACCCGAG 13247 |||||||| || | |||||| | ||||||| || || ||| ||| | ||| ||| Sbjct 101906 GAAGCTGCGCGTTTGCGCAGTTTTAAAGACTGGCCGCGATGCATGCGGCAAAAACCAGAG 101965 Query 13248 CAGATGGCGGATGCCGGTTTCTTCTACACTGGCTACGGTGACAATACAAAGTGCTTCTAT 13307 | | || || || |||||||||||||| || | || || || || ||||| |||||| Sbjct 101966 GAACTTGCCGAGGCTGGTTTCTTCTACACCGGTCAGGGGGATAAGACCAAGTGTTTCTAT 102025 Query 13308 TGTGACGGCGGATTGAAAGATTGGGAGCCGGAAGATGTACCTTGGGAACAGCATGTAAGA 13367 || || ||||| |||||||| ||||| || || || || ||||||||||| | | Sbjct 102026 TGCGATGGCGGTTTGAAAGACTGGGAAAATGATGACGTGCCCTGGGAACAGCACGCGCGC 102085 Query 13368 TGGTTCGACCGTTGCGCCTACGTTCAGCTAGTCAAGGGTAGAGACTACGTACAGAAAGTC 13427 |||||||| || ||||||||||| ||||| || ||||| | || ||||||||||| || Sbjct 102086 TGGTTCGATCGCTGCGCCTACGTGCAGCTGGTGAAGGGCCGCGAGTACGTACAGAAGGTG 102145 Query 13428 ATCACGGAAGCCTGCGT-GTTAC-----CCGGTGAGAACACTACCGTGTCAACAGCCGCG 13481 || | || |||||||| || || ||| | | | | |||| | | ||| | Sbjct 102146 ATGTCCGAGGCCTGCGTGGTGACGGCGGCCGAGGCGGAGAAGGACGTGGCGCCGGCCCGG 102205 Query 13482 CCAGTGTCCGAGC---CTATACCTGAGACAAAAATTGAAA-----AAGAGCCCCAAGTGG 13533 || | ||| | | ||| || || |||| | | | || || | Sbjct 102206 CCGCCCAGCCAGCCCACCACACCCAGCACGCAACCCGAAACGCCGGAAAACTCC--GTAG 102263 Query 13534 AAGATTCGAAACTGTGCAAGATATGCTACGTAGAAGAGTGCATCGTGTGCTTCGTACCGT 13593 | ||||| ||| |||| || || || || | ||| ||| ||| ||||||||||||||||| Sbjct 102264 ACGATTCCAAATTGTGTAAAATCTGTTATGCAGAGGAGCGCAACGTGTGCTTCGTACCGT 102323 Query 13594 GCGGTCACGTGGTGGCGTGTGCCAAGTGTGCGTTGAGTGTAGATAAGTGTCCGATGTGTC 13653 |||| ||||||||||| || || ||||| |||||| | ||| ||||| |||||||| | Sbjct 102324 GCGGACACGTGGTGGCCTGCGCTAAGTGCGCGTTGGCGGCAGACAAGTGCCCGATGTGCC 102383 Query 13654 GCA 13656 ||| Sbjct 102384 GCA 102386 >seq2205 Length=656796 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||| || | || ||||| || ||| |||||||| ||||||||||| Sbjct 548975 CCTCCTCTCAGCCTAAGCACTAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGAG 548916 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || |||| ||||| |||||||| || | || || ||||| || || Sbjct 548915 AGTGTGCGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGGG 548856 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||| |||||| ||| ||| ||| || | | | ||||| | |||||||| Sbjct 548855 ATGCCCTCTTTGTCCTGAATCTTTGCCTTCACATTCTCAATAGTGTCCGAAGCCTCCACC 548796 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||| |||||||| || || || ||||||||||| Sbjct 548795 TCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATTTGCAT 548749 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| | ||| ||||||||||||||||||| | || ||| | || || Sbjct 562495 TACCAAGTGGAATGTGGATTCCTTCTGAATGTTGTAGTTTGTGAGAGTGCGGCCATCTTC 562436 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || ||||| |||||||| || | || || ||||| || || | | ||| |||||| Sbjct 562435 CAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGGGATGCTCTCTTTGTCCTG 562376 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| ||| ||| || | | | |||| | ||||||| || | || || ||||| Sbjct 562375 AATCTTTGCCTTCACATTCTCAATAGTGTCTGAAGCCTCCACTTCGAGGGCGATAGTCTT 562316 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| || || || ||||||||||| Sbjct 562315 ACCCGTCAGGGTTTTTACGAAGATTTGCAT 562286 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| | ||| ||||||||||||||||||| ||| ||| || ||| Sbjct 554338 ACCAAGTGGAATGTGGATTCCTTCTGAATGTTGTAGTTTGAGAGTGTGCGGCTATCTTCC 554279 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| |||||||| || | || || ||||| || || | ||| |||||| | Sbjct 554278 AACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGGGATGTTCTCTTTGTCCTGA 554219 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | |||| | |||||||||| | |||||| || || Sbjct 554218 ATATTTGCCTTCACATTCTCAATAGTGTCTGAAGCCTCCACCTCGAGGGTAATGGTATTA 554159 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| || || || ||||||||||| Sbjct 554158 CCCGTCAGGGTTTTTACGAAGATTTGCAT 554130 >seq806 Length=81131 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| || ||||||||| || ||| | || |||| ||||||||||||||| Sbjct 48673 CTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGTCCATCTTCCAATTGTTTTCCGGCGAA 48732 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| | |||||| |||||||| | || ||||| || ||||||| ||||| Sbjct 48733 GATCAATCTCTGTTGATCGGGAGGAATGCCTTCCTTATCTTGAATTTTTGCTTTAACGTT 48792 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | || |||||||| | || || || || ||||||| ||||||||| Sbjct 48793 TTCAATGGTATCAGAGGGTTCCACCTCTAATGTTATGGTTTTCCCCGTCAAAGTCTTCAC 48852 Query 45325 AAAGATTTGCATGTTG 45340 |||||| ||||||||| Sbjct 48853 AAAGATCTGCATGTTG 48868 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCG 45184 ||||||||| || ||| ||||||||||| ||||| || || ||| || | || Sbjct 47971 TACCAAGTGAAGAGTGGATTCCTTCTGAATATTGTAATCAGACAAGGTTCGCC--CATCC 48028 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| || |||||||| ||||| ||||||||||| || || | ||| ||||||||| Sbjct 48029 TCCAATTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGAATACCTTCCTTGTCC 48088 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||| || || | | |||| || || || | || || ||| Sbjct 48089 TGAATTTTAGCTTTGACATTTTCAATTGTGTCAGAGGGTTCAACTTCTAGTGTGATAGTC 48148 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| |||| ||| || || ||||||||||| Sbjct 48149 TTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 48180 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 || || |||| ||| ||||||||||| ||||| || || | || | || ||| Sbjct 46118 ACTAAATGCAACGTAGATTCCTTCTGAATATTGTAATCAGACAATGTTCGTCCATCCTCC 46177 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| || |||||||| ||||| | ||||||||| ||||| | ||| ||||||||| | Sbjct 46178 AATTGCTTGCCGGCGAAGATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTGTCCTGA 46237 Query 45248 ATTTT 45252 ||||| Sbjct 46238 ATTTT 46242 >seq1608 Length=32450 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| || | || ||||| |||| || ||| ||||||||||||||||| Sbjct 31214 CCACCTCGCAGACGCAAAACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGAA 31155 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| | || ||||| || || |||||||| || | ||||| ||||| || || Sbjct 31154 AGAGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGA 31095 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || ||| || | | | |||| | |||||| Sbjct 31094 ATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCCACT 31035 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || || || || || || |||||||| || |||||||| Sbjct 31034 TCAAGAGTGATAGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 30988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395060875437475