Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2898 170 1e-37 seq2295 129 4e-25 seq1608 118 8e-22 seq806 118 8e-22 seq2205 91.5 1e-13 >seq2898 Length=111689 Score = 170 bits (188), Expect = 1e-37 Identities = 336/493 (68%), Gaps = 8/493 (2%) Strand=Plus/Plus Query 91459 GGATTAGCGCCTTTACCGCCCGGAAATTCCCAATCAATATCTACACCGTCAAAAAATTTC 91518 || |||||||| ||||| || || || ||||| ||||| || || || ||||| |||||| Sbjct 27893 GGGTTAGCGCCCTTACCACCAGGGAACTCCCAGTCAATGTCCACTCCATCAAAGAATTTC 27952 Query 91519 CAAACTTGCAAAAATTCTTTAACCGAATCAACGAACACGTTTCTTCGT----TTGACATC 91574 || || | || || || || || |||||||| || ||| || | ||| || Sbjct 27953 CAGGTTTCAAGGAAGTCCTTCACAGAGTCAACGAAG-CGCTTCCTCTTAACCTTGTCA-- 28009 Query 91575 GTGCATAAAATAGAACGGGTCCGACAAAGTCCAGCCACCGATGGACGGTAAAACTTTTAA 91634 ||| | || | |||| || || | || ||||| ||||| | ||| ||||| | || | Sbjct 28010 GTGAAGAAGA-AGAATGGATCAGCCAGGGTCCAACCACCAACGGAAGGTAAGATCTTCAG 28068 Query 91635 ATGCGGGTTGGCCAACTTGGCGGCCATTATCTGACCAAAGTTGCCCTTGTAAGGCTCGTT 91694 | || | ||| || ||| | ||| || || || |||||||| || ||||| Sbjct 28069 GTCAGGTCTTGCCTGTTTCAACATCATCAGCTGTCCGAAATTACCCTTGTAGGGTTCGTT 28128 Query 91695 CCAAGCGGATACACCTTTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGTATGGAAAC 91754 ||| | | | ||| ||||||||||| || | |||||||| || ||||| || || || Sbjct 28129 CCAGGACGCCAGACCCTTTTGTGGTTTCTGAAGAGCTGCCCAAGGGTCGTGAATCGATAC 28188 Query 91755 TTTAAAATCATCGCGTCCTTTGCACGATCGTTGCAAATTTTCAAAACTACCAGGTATTGT 91814 ||| || || || | || |||| |||||||||| | || || || || ||| Sbjct 28189 TTTGAAGTCCTCCCTGCCACTGCAGGATCGTTGCAGAGCTTGGAAGCTGCCTTCGATTTC 28248 Query 91815 TTTGAGGGCATCGTTTAATCCATCGCCTCCGCAAATGGGTATAAAACCGTACAACAGATG 91874 ||| | ||||| | ||||| || ||||| || || || |||||||||| ||||| Sbjct 28249 TTTCAAACTGTCGTTGATGCCATCTCCACCGCAGATTGGGATGAAACCGTACAGAAGATG 28308 Query 91875 GGACAAATTTGGCAGCGGCACCTTGTCGATTGGAAAGTTGCGTCCGTACACGCCCCATTC 91934 || | ||| || | || || ||||| || || || | ||| ||||||||||| Sbjct 28309 GGTAAGATTCGGGATGGGTACGCGGTCGACGGGGAACTTCCTGGGGTAGACGCCCCATTC 28368 Query 91935 AACAAAGTACGCG 91947 || ||||| ||| Sbjct 28369 GACGAAGTAAGCG 28381 >seq2295 Length=223346 Score = 129 bits (142), Expect = 4e-25 Identities = 178/247 (72%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 20099 ACATTTTGCACATAATCACGCCCTTTGACAAGCAGCAAGTATCCACAGTTACTAAACCAA 20158 || || || || || || || || || || ||| ||| ||| | ||| | ||||| Sbjct 102144 ACCTTCTGTACGTACTCGCGGCCCTTCACCAGCTGCACGTAGGCGCAGCGATCGAACCAG 102085 Query 20159 CGTGCGTGTTGTTCCCATGGAATGTCATCATTTTCCCAATCTTTAAGGCCGCCATTGCAA 20218 || ||||| |||||||| || | ||||||||||||||| ||||| | ||||||| |||| Sbjct 102084 CGCGCGTGCTGTTCCCAGGGCACGTCATCATTTTCCCAGTCTTTCAAACCGCCATCGCAA 102025 Query 20219 TAAAAACACAAAGTTTTATCACCGCG--CGACGTATAATAAAATCCCGCTTCGGCCAATT 20276 || |||||| || ||||| || | || ||| || ||| || || ||||| | || Sbjct 102024 TAGAAACACTTGGTCTTATCCCCCTGACCGGTGTAGAAGAAA--CCAGCCTCGGCAAGTT 101967 Query 20277 CATCGGGCCTTTGCTTCATGCTGCGCGGCCACCCTTCAAAAGTTTTTAAACGCGCAGCTT 20336 | || || ||||| ||||| |||||||| ||| |||| | ||||||||||||| Sbjct 101966 CCTCTGGTTTTTGCCGCATGCATCGCGGCCAGTCTTTAAAACTGCGCAAACGCGCAGCTT 101907 Query 20337 CTGATGC 20343 | || || Sbjct 101906 CGGAAGC 101900 >seq1608 Length=32450 Score = 118 bits (130), Expect = 8e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| || ||||||||||| ||||||||||| | || ||| || ||| Sbjct 29603 AGAACAAGGTGAAGCGTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTGCGACCGTCT 29544 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || || || || || || |||| |||| || ||||| ||| | |||||| || || Sbjct 29543 TCTAACTGCTTTCCAGCGAAGATCAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCT 29484 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || || || | | ||| |||||| ||||| ||||| |||||| | Sbjct 29483 TGAATTT-TGGCTTTTACATTTTCAATAGTGTCGGATGGCTCAACTTCAAGGGTGATAGT 29425 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| || ||||| ||||| |||||||| |||||| Sbjct 29424 TTTACCCGTCAAGGTTTTCACAAAAATCTGCATT 29391 >seq806 Length=81131 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || | | | ||| | |||||| || ||||||||||| || |||||||| | Sbjct 48409 TCCTCCGCGCAAACGCAATACTAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGA 48468 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | ||||||||| |||||||| ||| |||| | || ||| ||||| || Sbjct 48469 TAATGTGCGTCCATCTTCCAACTGTTTGCCGGCAAAGATCAATCGTTGCTGATCAGGTGG 48528 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | || |||||||| |||| | || || || | | | | |||||| ||||| Sbjct 48529 GATACCCTCCTTATCCTGGATTT-TGGCTTTAACATTTTCGATTGTGTCAGAAGGCTCAA 48587 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| ||||||| |||||||||||||| ||||||||||| Sbjct 48588 CCTCTAAAGTGATGGTTTTGCCAGTCAATGTTTTTACGAAAATTTGCAT 48636 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || || || || || |||||||||| | || | ||||||||||||| Sbjct 48662 TGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGTCCATCTTCCAATTGT 48721 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || || |||| | ||| |||||||| || | |||||||||||| ||||| | Sbjct 48722 TTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGGAATGCCTTCCTTATCTTGAATTT-T 48780 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || || | | ||| || ||| ||| || || | || ||| |||| || || Sbjct 48781 TGCTTTAACGTTTTCAATGGTATCAGAGGGTTCCACCTCTAATGTTATGGTTTTCCCCGT 48840 Query 18302 CAATGTTTTTACAAAAATTTGCATTTT 18328 ||| || || ||||| || ||||| || Sbjct 48841 CAAAGTCTTCACAAAGATCTGCATGTT 48867 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 |||||||||||||| |||||||| ||||| |||| | || | ||||| | || Sbjct 45896 TGAAGTGTTGATTCCTTTTGAATATTGTAATCGGAAAGAGTGCGTCCGTCTTCAAGCTGC 45955 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || || | || | |||||||||||| || | || || || || ||||| | Sbjct 45956 TTACCAGCGAAAATCAATCTTTGTTGATCTGGTGGAATTCCCTCTTTGTCTTGAATTT-T 46014 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || ||||| | | ||| |||||| ||| || ||| | || ||| |||| || || Sbjct 46015 GGCTTTGACATTTTCAATTGTGTCAGAGGGTTCAACTTCTAATGTAATGGTTTTACCAGT 46074 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 || ||||| |||||||||||||| Sbjct 46075 TAAAGTTTTCACAAAAATTTGCAT 46098 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | |||||||| ||| || ||||| || || || || || || || | Sbjct 48182 CCACCACGCAGACGAAGTACCAAGTGGAGAGTTGACTCCTTCTGGATATTATAATCAGAA 48241 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || || |||||||| || |||| |||| || || || ||| Sbjct 48242 AGAGTGCGGCCATCCTCTAACTGTTTGCCTGCGAAGATCAGTCGCTGCTGGTCTGGGGGA 48301 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| |||| | || ||||| | | ||| |||||| ||||| Sbjct 48302 ATACCTTCCTTATCCTGTATTT-TGGCTTTGACATTTTCAATTGTGTCAGACGGCTCAAC 48360 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || || |||| || || || |||||||| || ||||||||| Sbjct 48361 TTCTAAAGTTATTGTTTTACCAGTTAAAGTTTTTACGAATATTTGCATT 48409 >seq2205 Length=656796 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || ||||| || | ||| ||||| ||||| || || ||||||||||| | Sbjct 548975 CCTCCTCTCAGCCTAAGCACTAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGAG 548916 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||||||| ||||| || || ||||||| | ||| || || || Sbjct 548915 AGTGTGCGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGGG 548856 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| || || || ||| | | ||| || | ||| |||||| | ||| Sbjct 548855 ATGCCCTCTTTGTCCTGAATCTTTGCCTTCACATTCTCAATAGTGTCCGAAGCCTCCACC 548796 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||||| | || || |||| |||||||| || ||||||||| Sbjct 548795 TCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATTTGCATT 548748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379330245816375