Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq2898 185 7e-42 >seq2898 Length=111689 Score = 185 bits (204), Expect = 7e-42 Identities = 636/982 (65%), Gaps = 25/982 (3%) Strand=Plus/Plus Query 35873 TTAGCAATCTGTCTGTAGTCGACCACGCCGTTTTCCCATGTACCCGTGATCGGTCCGACG 35932 || || |||| ||||||||| || || || | | ||| ||||| ||| ||| || | Sbjct 27413 TTGGCTATCTCTCTGTAGTCCACTACACCATCCTGCCAGGTACCTTTGACCGGGCCAGTG 27472 Query 35933 GCTACGCCACTGAATGGATTGTCACTGTTGTAGTTGTGGACGCCCGTCCAACCGCGGCCG 35992 ||||| ||| ||||||| || | ||||| || ||| || |||||||| |||||| Sbjct 27473 GCTACACCAGTGAATGGGTTTCCGTCTTTGTAACCGTTGACTCCAGTCCAACCACGGCCG 27532 Query 35993 TACATTGCTACGCCCAACACGAGtttttttGGATTCACTCGTTGCGCGAGCAAAGCGTCC 36052 ||||| ||||| || | || | ||| || || | |||| || || | || | Sbjct 27533 TACATAGCTACACCAACGACAATTTTCTTAGGGCTGACTCCCTGAGCCAACAGGAATTTG 27592 Query 36053 ACGGCCACGTTGGCGGTGTACGGTTCGTTAGGTTTCCACGCGGAACCGTACAGTGCCGTC 36112 || | | || | ||||| | || || || ||||| |||| | ||| ||| || | Sbjct 27593 ACACCGAAGTCAGTTGTGTAAGTCTCCTTGGGGTTCCAGGCGGGAGCGTGCAGGGCAGCT 27652 Query 36113 TGATGACCGAGATCGGTATTAGACCAAGCTCCTTTGAAATCATAACTCATCACGAAAATT 36172 || || || ||| | || ||||||||||| ||||| || || ||||||| ||| || Sbjct 27653 TGGTGGCCAAGAGTGTCGTTTGACCAAGCTCCCTTGAAGTCGTAGCTCATCAAGAAGATG 27712 Query 36173 TTATCTAAATACTGTTGTGCTCGGTCGTAATTAACCGCGGCGATCTTGTCTATGCCAGCG 36232 | || | ||||| || || | ||| | || | |||||||| |||| | Sbjct 27713 TGGTCCATGTACTGCTGAGCCGCTTTGTAGTCTACTACCTGAATCTTGTCCCAACCAGAG 27772 Query 36233 CTAATCGCTGTGGTGAGTTCTAAAGTACGATTCGTTT--GTATTTGAACTT-GATCG--- 36286 || || |||| || ||||| ||| ||| || || || | | | ||| Sbjct 27773 CTGATGGCTGAAGTCAGTTC----GTAT--TTCTTTCCAGTCTTGGCAGACAGCTCGTTA 27826 Query 36287 AGCATGGCGCGCAATTCGCCCAATAAAGCGATATACGTGTTATTGTCGCGTTCCACATCG 36346 ||||| | | || ||| || | ||| || ||| | ||| || | Sbjct 27827 AGCATCTCTCTCAGTTCCTTCATCAGCTCGACGTAGATGTGACCGTCAT------CAGGG 27880 Query 36347 CCAACG---TTTGGATTGGCGCCTTTGCCGCCCGGAAATTCCCAATCAATATCGATGCCG 36403 | | || | || || ||||| || || || || || ||||| ||||| || | || Sbjct 27881 CTACCGAGATCAGGGTTAGCGCCCTTACCACCAGGGAACTCCCAGTCAATGTCCACTCCA 27940 Query 36404 TCGAAAAATTTCCATGTCAACACAAATTCACGCACGGATTCGACAAAAATTTGTCGCGTT 36463 || || |||||||| || | || || ||| || || || || | | | | Sbjct 27941 TCAAAGAATTTCCAGGTTTCAAGGAAGTCCTTCACAGAGTCAACGAAGCGCTTCCTCTTA 28000 Query 36464 CGCGCATC-GTGCATATGATAGAAGGGATCGGACAGTGTCCAACCGCCGATTGATGCCAA 36522 | || ||| | | || |||| ||||| | ||| |||||||| || | || | || Sbjct 28001 ACCTTGTCAGTGAAGAAGA-AGAATGGATCAGCCAGGGTCCAACCACCAACGGAAGGTAA 28059 Query 36523 CACTTTTAGATTGGGATTGGCCAATTTTGCTGCCATTAATTGACCAAAATTGCCTTTGTA 36582 | || || | || | ||| ||| ||| | || || ||||| || ||||| Sbjct 28060 GATCTTCAGGTCAGGTCTTGCCTGTTTCAACATCATCAGCTGTCCGAAATTACCCTTGTA 28119 Query 36583 GGGTTCGTTCCATG-CGCTAACGCCTGTTTGTGGTTTTTGGAGCGCCGCCCACGGATCGT 36641 |||||||||||| | ||| | ||| |||||||||| || || || ||||| || |||| Sbjct 28120 GGGTTCGTTCCAGGACGCCAGACCCT-TTTGTGGTTTCTGAAGAGCTGCCCAAGGGTCGT 28178 Query 36642 GTATGGAAACTTTAAAATTGTCCCTGCCAGCGCACGATCTTTGCAACGCTTCAAAACTCC 36701 | || || ||||| || | ||||||||| ||| |||| ||||| |||| || || | Sbjct 28179 GAATCGATACTTTGAAGTCCTCCCTGCCACTGCAGGATCGTTGCAGAGCTTGGAAGCTGC 28238 Query 36702 CCGTGATAGATTTTAAACTGTCGTTTATACCGTCACCGCCGCAAATCGGTATAAATCCGT 36761 | ||| ||| ||||||||||| || || || || ||||| || || || || |||| Sbjct 28239 CTTCGATTTCTTTCAAACTGTCGTTGATGCCATCTCCACCGCAGATTGGGATGAAACCGT 28298 Query 36762 ATAAAATGTGCGAAAGGTTCGGCGTGGGCACTTTGTCCACGGGAAAAGATCGACCGTAAA 36821 | | || || | ||| ||||| |||| || ||| ||||| || | ||| | Sbjct 28299 ACAGAAGATGGGTAAGATTCGGGATGGGTACGCGGTCGACGGGGAACTTCCTGGGGTAGA 28358 Query 36822 CGCCCCATTCGACAAAATAGGC 36843 ||||||||||||| || || || Sbjct 28359 CGCCCCATTCGACGAAGTAAGC 28380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418288833212000