Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2205 596 2e-165 seq2446 95.1 2e-14 seq1613 89.7 6e-13 >seq2205 Length=656796 Score = 596 bits (660), Expect = 2e-165 Identities = 1205/1758 (69%), Gaps = 44/1758 (3%) Strand=Plus/Plus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || || ||||| |||| |||||||||||||||||||| || | |||| | || ||| Sbjct 19221 GCTGGCTTCGTGCGTAAATAGTACATTCCCGTTTTTAAGCCCATTTTCCACGCATAGAAA 19280 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || ||| || | ||| |||| | || || || | ||| ||||| | ||||| || Sbjct 19281 TGAATAGATGTCAATTTACCATAATTTGGTTCAGCAACATGAATATTGAAGGATTGGCTC 19340 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||| || || || || ||||| |||||||||| ||| | || ||| | | |||| Sbjct 19341 TGATCAATAAATGCCCCTCTGTCAGCAGCCATTTGTATTGTTGTTTTTACAGACACTTCC 19400 Query 62247 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGA 62302 || | ||||||||| || || |||| |||||| |||| | || |||| ||||| || Sbjct 19401 CAGACAGTTTTATATAAGTCCCTTA-TATCTTTAGGAATTGCTTCAATATTTTGAATAGA 19459 Query 62303 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362 |||| || || || ||| || || || |||| |||||| | || ||||| Sbjct 19460 TCCATTATTGTGGATGATAAGATTTTTCATATCTTCATCCCATAAATCAGCTTCAGTTAA 19519 Query 62363 AACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTA 62422 | ||| | | ||| | ||||| ||||||||||| || ||||| |||| | || Sbjct 19520 ATCTCGTAACAAATGATGATTAACAACTTGGAATTCACCTGACAAGACTCGTCTTTGATA 19579 Query 62423 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62482 ||| || ||| | ||||| | || |||||||||||||| ||||||||||| ||||| Sbjct 19580 AATGTTGGAAGTAAATGGTTCAAATGATTCATTATTTCCCAATATTTGAGCAGTGGATGC 19639 Query 62483 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCT 62540 ||| ||||| || || | |||| |||||||||||| ||||| | ||||| ||| Sbjct 19640 AGTTGGCATTGGAGCTAATAATAGGGAATTTCTAAGACC--ATGTTTGGCTATTTTTTCT 19697 Query 62541 TTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGA 62600 || || |||||||||| | || | || | |||||| | Sbjct 19698 TTGAGTGACACCCAATTCCACAAGTCTGTGGGGGTTTTATTCCACATATCATATTGCAAT 19757 Query 62601 ATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAG 62659 ||||| | |||||| | || | ||| |||| || ||||| || | ||||||||||| Sbjct 19758 ATACCTTGACTGGCAGGAC-AGCCTTCATAAGTCTCATAGACGCCATACTTCTCAGCTAA 19816 Query 62660 TTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATC 62719 | |||||| || |||| ||| || |||||||| |||||||| || | | ||||| | Sbjct 19817 CTCACAACTGGCTTCTAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAATTT 19876 Query 62720 TTGTGCTTCCGGGCTATCAAATGG-ATAAT--TTAAGAGAATAAACGCGTCCGCTAATCC 62776 |||| || || || | || ||| |||| || ||| || || |||||||| Sbjct 19877 AATTGCTGCCTCACTTTCGTAAGGTATACGCATTAA---AACAAATGCATCAGCTAATCC 19933 Query 62777 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 62836 ||| || ||||| ||||| |||| || ||| |||| ||| ||| || ||||| | || Sbjct 19934 TTGGACTCCAATTCCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCTCTGGCACTGG 19993 Query 62837 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACT-TTGACCACATCCT 62895 |||||||| | ||| ||||||||||| ||| |||||| || | || || |||| Sbjct 19994 GTAATAATTTACATCAATAATTTTATTTAGA-TTCTGAGTTATAGTCTTAGTAACTTCCT 20052 Query 62896 TCAGTTTGAGAAAATCAAA----TCGCCCATCTATTACAAACATGTTCAATGCAACAGAT 62951 | | |||| |||| | | | | || || | |||||||| || || |||| ||| Sbjct 20053 TTAATTTGGTGAAATTATATGTTTTGTCC-TCATTCACAAACATATTTAAAGCAATTGAT 20111 Query 62952 GCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 63011 || ||||| ||||| || || |||| | | |||| || || |||||||| | Sbjct 20112 GCTAGATTGCACACAGCCACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCACAAG 20171 Query 63012 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63071 || || || || ||||| || || || | ||| || || ||| | || || | ||| ||| Sbjct 20172 TTGCTGCATTTAATAGTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCTTTA 20231 Query 63072 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 63131 ||||| ||| ||||||| || ||||||| || | ||| ||||| |||||||| | ||| Sbjct 20232 TAAAGCATGTATGGAGTTCCTGTTTCAACTTGTGCTTCGATAATAGCTTTCCAAAGAACT 20291 Query 63132 CGAGCCTTTATTATAGATT--TGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTT 63189 |||| | | | | || | | | | ||| |||| ||| |||||| || Sbjct 20292 TGAGCTCTCA--CTTGTTTCACGAAGCGACCCTCTTTTTCATATTTCTCATACAAAGCTT 20349 Query 63190 CGAACTCGTCTCCCCAAACATTGT-CCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 | || || || |||| |||| | | | | || ||||||||||| || ||||| | | Sbjct 20350 CAAATTCCTCACCCC-AACAGTCTGCTAGTCCAGGACATTCATGGGGGCACATGATACTC 20408 Query 63249 CACTCTCCGTCAT--CCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63305 || ||| | || | ||| |||| |||||| || | ||||| ||||| | ||| ||| Sbjct 20409 CAATCT---TGATTGCTTTCTACTCTTTTCATGAACAAGTCAGGTATCCATAAAGC-ATA 20464 Query 63306 -AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63364 ||||| ||||| | | ||| || || || || |||||||| | ||| ||||| | Sbjct 20465 GAATAGCTCTCTGGCACGGACTTCTTCTTTCCCAGTGTTCTTTTTCAAATCAAGGAATTC 20524 Query 63365 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63424 | ||||||| |||||| ||||| ||||||||||| | | || || | ||| || || Sbjct 20525 AAATATATCAGCATGCCATGGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTTATTACC 20584 Query 63425 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63484 ||| || |||| |||| ||| ||||| || |||||||| ||||| || | | ||| || Sbjct 20585 TCCTTGGTCTACATATCGAGCAGTGTTGTTGTAAACTCTTAACATGGGTACTAGACCATT 20644 Query 63485 TGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGAT 63542 || | |||||| ||||| | ||||| ||| | || | ||| | | || ||| Sbjct 20645 AGAGACACCATTTGTACCAGCTATATAAGTTCCCTTTGCTCTAATGCAGT-GTACATGA- 20702 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 |||||||| || || || ||||| || | || ||| |||||||||||||||| || Sbjct 20703 AGACCTATCCCACCAGCTGACTTAGAAATGAGGGCACATTGTTTTAACGTGTCATAAATT 20762 Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTA 63662 || || ||||||||||| |||| | ||||| || ||| | ||| | || | | Sbjct 20763 CCCTCAATGCTATCATCCCTCATTGCTATAAGAAAGCATGAAGATAATTGTGGTCGTGGA 20822 Query 63663 GTTCCCGCATTAAATAAG-GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||| | || | | | ||| || ||| || || ||||| ||||||| || || ||||| Sbjct 20823 GTTGCTGC-TGAGAAAAGAGTTGGACTTGCATGTGTAAAATATTTTTCTGACAGAAGATT 20881 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || | ||||| || || || | ||| ||||||| | || ||||| | Sbjct 20882 GTAGGTGTTTATAGCCCCCTCGATGTCTTCTCCATGTATTCCTATAGAAACTCGCATGAG 20941 Query 63782 CATGTGCTGAGGTCTTTC 63799 ||| ||||| || ||||| Sbjct 20942 CATATGCTGTGGCCTTTC 20959 >seq2446 Length=565066 Score = 95.1 bits (104), Expect = 2e-14 Identities = 244/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Minus Query 155254 ATGACTCCA--ATTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTTTA 155311 ||||||||| |||| || ||||| || ||| | || | || || | | ||| | | Sbjct 540529 ATGACTCCAGTATTA--CCTATGTTGGCTGAAGCTTGCAAATCAGTGGAAATGGCAATGA 540472 Query 155312 AAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTC 155371 | |||| ||| |||||||| | || ||||||| || |||||||| |||||||| | Sbjct 540471 AGAAATGTCCTAACGGAATGTTCTCAGAGATCAAATATGACGGTGAAAGGGTACAAGTGC 540412 Query 155372 ATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATA 155431 |||||||| || |||||| || || |||| | ||||| || | | |||| Sbjct 540411 ATAAAAAAGGGAATGAGTTTAAATATTTCTCTAGAGCATTAAAACCTGTTATGGCACATA 540352 Query 155432 AAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTAT 155491 |||| | || | || || || |||| |||||||| ||| | || | | | Sbjct 540351 AAGTCAGTCATTTTAAGGATTATTTACCACAAGCATTTCCAAAGGGGACCGATTTGATTC 540292 Query 155492 TGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTACCGC---TACCGTTTGGAAGTT 155548 | ||| ||||| || | | ||||| | ||| | | || | || ||||| | Sbjct 540291 TTGATGCTGAAGTTTTGATGGTAGATGTGAATACAGGAAAGCCTTTGCCATTTGGTACAC 540232 Query 155549 TAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACT 155608 ||||||| || ||| || |||| ||| | | | | ||| |||| |||||||||| Sbjct 540231 TAGGTATCCATAAACAGTCTGAATTCAAAGATGCACAAGTATGTCTGTTTGTGTTTGACT 540172 Query 155609 GTTTATACT 155617 ||||||||| Sbjct 540171 GTTTATACT 540163 >seq1613 Length=46735 Score = 89.7 bits (98), Expect = 6e-13 Identities = 155/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||| ||| | || || || || | ||| ||||| | || ||||| | Sbjct 40318 CCTCATCTCTAGAAATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCTCGCTTCT 40377 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | |||||| || || || || || || ||||| || ||||| || |||||||||| Sbjct 40378 TCATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAATATGCCTTCAACAGCAGCAAAGG 40437 Query 33724 CAATAAGTCTCTCTCCATAACCGGC--GCTGTCATG-TATCCACTTTTGAGCCCAATCGG 33780 |||| | | ||| || | ||| || | || ||||||| | ||||| || | Sbjct 40438 CAATGATACGCTCAGCAAATGTGGCTGACTTGCTTGCAATCCACTGGAGGGCCCAGTCAG 40497 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 ||||||| || ||||| |||| ||||| || |||||||| || Sbjct 40498 CCTTCTTCTTCACACAGGGCAGGGTTTCAATAGCATTAAACAG 40540 Score = 86.0 bits (94), Expect = 8e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 ||||| || || |||| || || || || ||||| ||||||||||| ||||| || || Sbjct 40783 TACATCTCAGAGTGAACATTCTCCATAGCAATCTGGAATCCGTAGAAGCATCTGGCTTCT 40842 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992 || | ||||| ||| | || ||||| | || || ||||| || || |||||| Sbjct 40843 GTCACTTGCACCTCTTGGGAGAAGCGTTCCACCAAGTTCTCATTGACAATGCCATCAGAC 40902 Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAA 34024 || ||||| || |||| |||||||| || || Sbjct 40903 GCAGCAAAGAAAGCCAGCACATGTTTGATGAA 40934 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || |||| ||| ||||| || || ||||| || || ||||||||||| || ||||| | | Sbjct 41418 TTGGATAGATCGACTTCCTCAACGGTCCAGAACGAAGCCTCTGCCTTCTTGTACATTTCC 41477 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 ||||| ||| |||| || |||||||| || ||||| Sbjct 41478 CAGATATCAGGATACTGTATTGGGAATATTACAAA 41512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629794178658000