Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19]
2,975 sequences; 341,147,348 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq2205 596 2e-165
seq2446 95.1 2e-14
seq1613 89.7 6e-13
>seq2205
Length=656796
Score = 596 bits (660), Expect = 2e-165
Identities = 1205/1758 (69%), Gaps = 44/1758 (3%)
Strand=Plus/Plus
Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126
|| || ||||| |||| |||||||||||||||||||| || | |||| | || |||
Sbjct 19221 GCTGGCTTCGTGCGTAAATAGTACATTCCCGTTTTTAAGCCCATTTTCCACGCATAGAAA 19280
Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186
|| ||| || | ||| |||| | || || || | ||| ||||| | ||||| ||
Sbjct 19281 TGAATAGATGTCAATTTACCATAATTTGGTTCAGCAACATGAATATTGAAGGATTGGCTC 19340
Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246
||||| || || || || ||||| |||||||||| ||| | || ||| | | ||||
Sbjct 19341 TGATCAATAAATGCCCCTCTGTCAGCAGCCATTTGTATTGTTGTTTTTACAGACACTTCC 19400
Query 62247 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGA 62302
|| | ||||||||| || || |||| |||||| |||| | || |||| ||||| ||
Sbjct 19401 CAGACAGTTTTATATAAGTCCCTTA-TATCTTTAGGAATTGCTTCAATATTTTGAATAGA 19459
Query 62303 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362
|||| || || || ||| || || || |||| |||||| | || |||||
Sbjct 19460 TCCATTATTGTGGATGATAAGATTTTTCATATCTTCATCCCATAAATCAGCTTCAGTTAA 19519
Query 62363 AACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTA 62422
| ||| | | ||| | ||||| ||||||||||| || ||||| |||| | ||
Sbjct 19520 ATCTCGTAACAAATGATGATTAACAACTTGGAATTCACCTGACAAGACTCGTCTTTGATA 19579
Query 62423 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62482
||| || ||| | ||||| | || |||||||||||||| ||||||||||| |||||
Sbjct 19580 AATGTTGGAAGTAAATGGTTCAAATGATTCATTATTTCCCAATATTTGAGCAGTGGATGC 19639
Query 62483 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCT 62540
||| ||||| || || | |||| |||||||||||| ||||| | ||||| |||
Sbjct 19640 AGTTGGCATTGGAGCTAATAATAGGGAATTTCTAAGACC--ATGTTTGGCTATTTTTTCT 19697
Query 62541 TTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGA 62600
|| || |||||||||| | || | || | |||||| |
Sbjct 19698 TTGAGTGACACCCAATTCCACAAGTCTGTGGGGGTTTTATTCCACATATCATATTGCAAT 19757
Query 62601 ATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAG 62659
||||| | |||||| | || | ||| |||| || ||||| || | |||||||||||
Sbjct 19758 ATACCTTGACTGGCAGGAC-AGCCTTCATAAGTCTCATAGACGCCATACTTCTCAGCTAA 19816
Query 62660 TTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATC 62719
| |||||| || |||| ||| || |||||||| |||||||| || | | ||||| |
Sbjct 19817 CTCACAACTGGCTTCTAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAATTT 19876
Query 62720 TTGTGCTTCCGGGCTATCAAATGG-ATAAT--TTAAGAGAATAAACGCGTCCGCTAATCC 62776
|||| || || || | || ||| |||| || ||| || || ||||||||
Sbjct 19877 AATTGCTGCCTCACTTTCGTAAGGTATACGCATTAA---AACAAATGCATCAGCTAATCC 19933
Query 62777 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 62836
||| || ||||| ||||| |||| || ||| |||| ||| ||| || ||||| | ||
Sbjct 19934 TTGGACTCCAATTCCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCTCTGGCACTGG 19993
Query 62837 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACT-TTGACCACATCCT 62895
|||||||| | ||| ||||||||||| ||| |||||| || | || || ||||
Sbjct 19994 GTAATAATTTACATCAATAATTTTATTTAGA-TTCTGAGTTATAGTCTTAGTAACTTCCT 20052
Query 62896 TCAGTTTGAGAAAATCAAA----TCGCCCATCTATTACAAACATGTTCAATGCAACAGAT 62951
| | |||| |||| | | | | || || | |||||||| || || |||| |||
Sbjct 20053 TTAATTTGGTGAAATTATATGTTTTGTCC-TCATTCACAAACATATTTAAAGCAATTGAT 20111
Query 62952 GCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 63011
|| ||||| ||||| || || |||| | | |||| || || |||||||| |
Sbjct 20112 GCTAGATTGCACACAGCCACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCACAAG 20171
Query 63012 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63071
|| || || || ||||| || || || | ||| || || ||| | || || | ||| |||
Sbjct 20172 TTGCTGCATTTAATAGTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCTTTA 20231
Query 63072 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 63131
||||| ||| ||||||| || ||||||| || | ||| ||||| |||||||| | |||
Sbjct 20232 TAAAGCATGTATGGAGTTCCTGTTTCAACTTGTGCTTCGATAATAGCTTTCCAAAGAACT 20291
Query 63132 CGAGCCTTTATTATAGATT--TGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTT 63189
|||| | | | | || | | | | ||| |||| ||| |||||| ||
Sbjct 20292 TGAGCTCTCA--CTTGTTTCACGAAGCGACCCTCTTTTTCATATTTCTCATACAAAGCTT 20349
Query 63190 CGAACTCGTCTCCCCAAACATTGT-CCAATCTAGGACATTCATCCGGACACATCAACGAC 63248
| || || || |||| |||| | | | | || ||||||||||| || ||||| | |
Sbjct 20350 CAAATTCCTCACCCC-AACAGTCTGCTAGTCCAGGACATTCATGGGGGCACATGATACTC 20408
Query 63249 CACTCTCCGTCAT--CCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63305
|| ||| | || | ||| |||| |||||| || | ||||| ||||| | ||| |||
Sbjct 20409 CAATCT---TGATTGCTTTCTACTCTTTTCATGAACAAGTCAGGTATCCATAAAGC-ATA 20464
Query 63306 -AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63364
||||| ||||| | | ||| || || || || |||||||| | ||| ||||| |
Sbjct 20465 GAATAGCTCTCTGGCACGGACTTCTTCTTTCCCAGTGTTCTTTTTCAAATCAAGGAATTC 20524
Query 63365 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63424
| ||||||| |||||| ||||| ||||||||||| | | || || | ||| || ||
Sbjct 20525 AAATATATCAGCATGCCATGGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTTATTACC 20584
Query 63425 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63484
||| || |||| |||| ||| ||||| || |||||||| ||||| || | | ||| ||
Sbjct 20585 TCCTTGGTCTACATATCGAGCAGTGTTGTTGTAAACTCTTAACATGGGTACTAGACCATT 20644
Query 63485 TGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGAT 63542
|| | |||||| ||||| | ||||| ||| | || | ||| | | || |||
Sbjct 20645 AGAGACACCATTTGTACCAGCTATATAAGTTCCCTTTGCTCTAATGCAGT-GTACATGA- 20702
Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602
|||||||| || || || ||||| || | || ||| |||||||||||||||| ||
Sbjct 20703 AGACCTATCCCACCAGCTGACTTAGAAATGAGGGCACATTGTTTTAACGTGTCATAAATT 20762
Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTA 63662
|| || ||||||||||| |||| | ||||| || ||| | ||| | || | |
Sbjct 20763 CCCTCAATGCTATCATCCCTCATTGCTATAAGAAAGCATGAAGATAATTGTGGTCGTGGA 20822
Query 63663 GTTCCCGCATTAAATAAG-GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721
||| | || | | | ||| || ||| || || ||||| ||||||| || || |||||
Sbjct 20823 GTTGCTGC-TGAGAAAAGAGTTGGACTTGCATGTGTAAAATATTTTTCTGACAGAAGATT 20881
Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781
||| || | ||||| || || || | ||| ||||||| | || ||||| |
Sbjct 20882 GTAGGTGTTTATAGCCCCCTCGATGTCTTCTCCATGTATTCCTATAGAAACTCGCATGAG 20941
Query 63782 CATGTGCTGAGGTCTTTC 63799
||| ||||| || |||||
Sbjct 20942 CATATGCTGTGGCCTTTC 20959
>seq2446
Length=565066
Score = 95.1 bits (104), Expect = 2e-14
Identities = 244/369 (66%), Gaps = 7/369 (2%)
Strand=Plus/Minus
Query 155254 ATGACTCCA--ATTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTTTA 155311
||||||||| |||| || ||||| || ||| | || | || || | | ||| | |
Sbjct 540529 ATGACTCCAGTATTA--CCTATGTTGGCTGAAGCTTGCAAATCAGTGGAAATGGCAATGA 540472
Query 155312 AAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTC 155371
| |||| ||| |||||||| | || ||||||| || |||||||| |||||||| |
Sbjct 540471 AGAAATGTCCTAACGGAATGTTCTCAGAGATCAAATATGACGGTGAAAGGGTACAAGTGC 540412
Query 155372 ATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATA 155431
|||||||| || |||||| || || |||| | ||||| || | | ||||
Sbjct 540411 ATAAAAAAGGGAATGAGTTTAAATATTTCTCTAGAGCATTAAAACCTGTTATGGCACATA 540352
Query 155432 AAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTAT 155491
|||| | || | || || || |||| |||||||| ||| | || | | |
Sbjct 540351 AAGTCAGTCATTTTAAGGATTATTTACCACAAGCATTTCCAAAGGGGACCGATTTGATTC 540292
Query 155492 TGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTACCGC---TACCGTTTGGAAGTT 155548
| ||| ||||| || | | ||||| | ||| | | || | || ||||| |
Sbjct 540291 TTGATGCTGAAGTTTTGATGGTAGATGTGAATACAGGAAAGCCTTTGCCATTTGGTACAC 540232
Query 155549 TAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACT 155608
||||||| || ||| || |||| ||| | | | | ||| |||| ||||||||||
Sbjct 540231 TAGGTATCCATAAACAGTCTGAATTCAAAGATGCACAAGTATGTCTGTTTGTGTTTGACT 540172
Query 155609 GTTTATACT 155617
|||||||||
Sbjct 540171 GTTTATACT 540163
>seq1613
Length=46735
Score = 89.7 bits (98), Expect = 6e-13
Identities = 155/223 (70%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| |||||| ||| | || || || || | ||| ||||| | || ||||| |
Sbjct 40318 CCTCATCTCTAGAAATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCTCGCTTCT 40377
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| | |||||| || || || || || || ||||| || ||||| || ||||||||||
Sbjct 40378 TCATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAATATGCCTTCAACAGCAGCAAAGG 40437
Query 33724 CAATAAGTCTCTCTCCATAACCGGC--GCTGTCATG-TATCCACTTTTGAGCCCAATCGG 33780
|||| | | ||| || | ||| || | || ||||||| | ||||| || |
Sbjct 40438 CAATGATACGCTCAGCAAATGTGGCTGACTTGCTTGCAATCCACTGGAGGGCCCAGTCAG 40497
Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823
||||||| || ||||| |||| ||||| || |||||||| ||
Sbjct 40498 CCTTCTTCTTCACACAGGGCAGGGTTTCAATAGCATTAAACAG 40540
Score = 86.0 bits (94), Expect = 8e-12
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932
||||| || || |||| || || || || ||||| ||||||||||| ||||| || ||
Sbjct 40783 TACATCTCAGAGTGAACATTCTCCATAGCAATCTGGAATCCGTAGAAGCATCTGGCTTCT 40842
Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992
|| | ||||| ||| | || ||||| | || || ||||| || || ||||||
Sbjct 40843 GTCACTTGCACCTCTTGGGAGAAGCGTTCCACCAAGTTCTCATTGACAATGCCATCAGAC 40902
Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAA 34024
|| ||||| || |||| |||||||| || ||
Sbjct 40903 GCAGCAAAGAAAGCCAGCACATGTTTGATGAA 40934
Score = 86.0 bits (94), Expect = 8e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127
|| |||| ||| ||||| || || ||||| || || ||||||||||| || ||||| | |
Sbjct 41418 TTGGATAGATCGACTTCCTCAACGGTCCAGAACGAAGCCTCTGCCTTCTTGTACATTTCC 41477
Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162
||||| ||| |||| || |||||||| || |||||
Sbjct 41478 CAGATATCAGGATACTGTATTGGGAATATTACAAA 41512
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629794178658000
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