Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2205 612 2e-170 seq1613 93.3 4e-14 >seq2205 Length=656796 Score = 612 bits (678), Expect = 2e-170 Identities = 1214/1778 (68%), Gaps = 28/1778 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| ||||| | |||| ||||| || | || || | | ||| |||||||| ||| Sbjct 19194 TCAACAGTGAACTGGATAGCATTTGCGGCTGGCTTCGTGCGTAAATAGTACATTCCCGTT 19253 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| |||| | |||| | || ||||| ||| |||| ||| | || | || | | Sbjct 19254 TTTAAGCCCATTTTCCACGCATAGAAATGAATAGATGTCAATTTACCATAATTTGGTTCA 19313 Query 36910 TCTATAT--ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCA 36967 | | || |||||| | ||||| || ||||| ||||| || |||||||| || |||| Sbjct 19314 GCAACATGAATATTG--AAGGATTGGCTCTGATCAATAAATGCCCCTCTGTCAGCAGCCA 19371 Query 36968 TTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 ||| || | |||| ||| | ||||| || |||||||||| | |||||| | Sbjct 19372 TTTGTATTGTTGTTTTTACAGACACTTCCCAGACAGTTTTATATAAGTCCCTTATATCTT 19431 Query 37028 CTGGTAAATCT---AAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGT 37084 || | || | || ||||||||| ||||||| | || ||| || || | Sbjct 19432 TAGGAATTGCTTCAATATTTTGAATAGATCCATTATTGTGGATGATAAGATTTTTCATAT 19491 Query 37085 CATTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCTG 37142 | | || ||| | || | ||| ||| |||| || | || |||| ||||| || Sbjct 19492 CTTCATCCCATAAAT--CAGCTTCAGTTAAATCTCGTAACAAATGATGATTAACAACTTG 19549 Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202 || || || || || |||| |||| ||| || ||| |||| ||||||||| || || Sbjct 19550 GAATTCACCTGACAAGACTCGTCTTTGATAAATGTTGGAAGTAAATGGTTCAAATGATTC 19609 Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262 |||||| | |||||||||| || |||||||| |||||||| |||| || ||| ||| Sbjct 19610 ATTATTTCCCAATATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTAATAATAGGGAATT 19669 Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 ||| | |||||| | ||| | | ||| ||| ||||| ||| || ||||| || Sbjct 19670 TCTAAGACCATGTTTGGCTATTTTTTCTTTGAGTGACACCCAATTCCACAAGTCTGTGGG 19729 Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382 | | || ||||||||||||||| | ||||||| ||| || ||| | | | ||| || Sbjct 19730 GGTTTTATTCCACATATCATATTGCAATATACCTTGACTGGCAGGACAGCCTTCATAAGT 19789 Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATAT 37442 |||||| || || | | ||||| || ||||| | ||||||||| ||||||| || Sbjct 19790 CTCATAGACGCCATACTTCTCAGCTAACTCACAACTGGCTTCTAGTGCCCCATAATAAAT 19849 Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCG-AATGCATAGCCCA 37501 |||||| || |||||| ||||||| | ||||| | || || ||| || | ||| | || Sbjct 19850 TGTTTCAAATATTTGTTGATTTAATTTAATTGCTGCCTCACTTTCGTAAGGTATA-CGCA 19908 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 ||| | ||| ||||||| || || || || || || || ||||||| || || ||| Sbjct 19909 TTAAAACAAATGCATCAGCTAATCCTTGGACTCCAATTCCGATGGGTCGGTGCCTCATAT 19968 Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTT 37621 | || | | ||| |||||| |||||||| | ||| || |||||||||||||| | Sbjct 19969 TTGAGTTTTTTGCCTCTGGCACTGGGTAATAATTTACATCAATAATTTTATTTAGATTCT 20028 Query 37622 TAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAA---TACGTTATTATTAA 37678 | || | || |||| | | || ||| ||| || | | || | ||| | Sbjct 20029 GAGTTATAGTCTTAGTAACTTCCTTTAATTTGGTGAAATTATATGTTTTGTCCTCATTCA 20088 Query 37679 CAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAA 37738 |||| || | || | ||| ||| ||||||| || ||||| ||||||||| | Sbjct 20089 CAAACATATTTAAAGCAATTGATGCTAGATTGCACACAGCCACTTCATCTGATGAGGTGT 20148 Query 37739 ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGG 37798 ||| || ||| || || || | || || || |||| || ||||| || |||| ||| Sbjct 20149 ATTCTACAATTTCAGTGCACAAGTTGCTGCATTTAATAGTACCCAAGTTCTTTTGGTTGC 20208 Query 37799 ATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCT 37858 |||| |||| || ||||||||||| || || || || |||||| ||| | ||| || | Sbjct 20209 TTTTTCTATTGCATGAATCTTTATAAAGCATGTATGGAGTTCCTGTTTCAACTTGTGCTT 20268 Query 37859 CGATAATAGATTTCCATA-AACTTCTTGCTTTAACGATCGCTTTA--AtttttttCTTTG 37915 ||||||||| |||||| | ||||| ||| | || | | || | | || | Sbjct 20269 CGATAATAGCTTTCCAAAGAACTT-GAGCTCTCAC--TTGTTTCACGAAGCGACCCTCTT 20325 Query 37916 TTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACA-TCGCATAATCCTGGA 37974 |||| |||| ||| || | ||| || | ||||| ||| || || ||| ||| Sbjct 20326 TTTCATATTTCTCATACAAAGCTTCAAATTCCTCACCCCA-ACAGTCTGCTAGTCCAGGA 20384 Query 37975 CATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAA 38034 ||||| || ||||| | | ||| |||| || ||||||| | || ||| || || Sbjct 20385 CATTCATGGGGGCACATGATACTCCAATCTTGATTGCTTTCTACTCTTTTCATGAACAAG 20444 Query 38035 TCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTC 38094 ||||||| |||||| ||| |||| ||| ||| | |||||| ||||| ||| Sbjct 20445 TCAGGTATCCATAAAGCATAGAATAGCTCTCTGGCACGGACTTCTTCTTTCCCAGTGTTC 20504 Query 38095 TTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATT 38154 ||| | || || || || ||||||||||| ||||||||||||| || || | | | Sbjct 20505 TTTTTCAAATCAAGGAATTCAAATATATCAGCATGCCATGGTTCTAAGTATATGGCAAAT 20564 Query 38155 GCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTT 38214 || || |||||||||| |||||| || | | ||||| | | ||||| || || | |||| Sbjct 20565 GCGCCGGGTCTTTTATTACCTCCTTGGTCTACATATCGAGCAGTGTTGTTGTAAACTCTT 20624 Query 38215 AACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCT 38274 ||||| ||||||| ||||||||| || ||| |||| | ||||||||| ||||| ||| Sbjct 20625 AACATGGGTACTAGACCATTAGAGACACCATTTGTACCAGCTATATAAGTTCCCTTTGCT 20684 Query 38275 CGTAT--ATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATT 38332 | || | | || || | ||||| ||||| || || || || | || |||| Sbjct 20685 CTAATGCAGTGTACAT-GA-AGACCTATCCCACCAGCTGACTTAGAAATGAGGGCACATT 20742 Query 38333 GTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAAC 38392 |||||||||| ||| | || || || || || |||||| | |||| || | ||| || Sbjct 20743 GTTTTAACGTGTCATAAATTCCCTCAATGCTATCATCCCTCATTGCTATAAGAAAGCATG 20802 Query 38393 TAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACC 38452 ||| | ||| || ||||||| | || || | || ||| ||||||| | || Sbjct 20803 AAGATAATTGTGGTCGTGGAGTTGCTGCTGAGAAAAGAGTTGGACTTGCATGTGTAAAAT 20862 Query 38453 ATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATAC 38512 ||||||| |||| | ||| || || | ||| | | || || || | || || || | Sbjct 20863 ATTTTTCTGACAGAAGATTGTAGGTGTTTATAGCCCCCTCGATGTCTTCTCCATGTATTC 20922 Query 38513 CTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCT 38550 ||| ||| || | ||| |||||||| ||||| |||||| Sbjct 20923 CTATAGAAACTCGCATGAGCATATGCTGTGGCCTTTCT 20960 >seq1613 Length=46735 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 11648 AAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGt 11707 |||||| | |||||| || || ||||| ||||| ||||| |||||||||||||| Sbjct 40315 AAACCT-CATCTCTAGAAATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCTCGC 40373 Query 11708 ttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCA 11767 || || |||||||| || | ||||| ||||| |||||||| || || ||||| ||| Sbjct 40374 TTCTTCATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAATATGCCTTCAACAGCAGCA 40433 Query 11768 AATGCTACTACTCTTTCTCCATAT---ACCTTGTTGCTAGATATCCATTTTCTGGCCCAA 11824 || || | | | || || || | ||||| | ||||| | |||||| Sbjct 40434 AAGGCAATGATACGCTCAGCAAATGTGGCTGACTTGCTTGCAATCCACTGGAGGGCCCAG 40493 Query 11825 TCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAA 11868 ||||| ||||| || || || || ||||| ||||| ||||| Sbjct 40494 TCAGCCTTCTTCTTCACACAGGGCAGGGTTTCAATAGCATTAAA 40537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468507376734000