Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2205 571 8e-158 seq1613 104 3e-17 >seq2205 Length=656796 Score = 571 bits (632), Expect = 8e-158 Identities = 1198/1760 (68%), Gaps = 48/1760 (3%) Strand=Plus/Plus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 || || ||||| |||| |||||||||||||||||||| || | |||| | || ||| Sbjct 19221 GCTGGCTTCGTGCGTAAATAGTACATTCCCGTTTTTAAGCCCATTTTCCACGCATAGAAA 19280 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 || ||| || | ||| |||| | || || || | ||| ||||| | ||||| || Sbjct 19281 TGAATAGATGTCAATTTACCATAATTTGGTTCAGCAACATGAATATTGAAGGATTGGCTC 19340 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| || || || || ||||| |||||||||| ||| | || ||| | | |||| Sbjct 19341 TGATCAATAAATGCCCCTCTGTCAGCAGCCATTTGTATTGTTGTTTTTACAGACACTTCC 19400 Query 65040 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGA 65095 || | ||||||||| || || |||| |||||| |||| | || |||| ||||| || Sbjct 19401 CAGACAGTTTTATATAAGTCCCTTA-TATCTTTAGGAATTGCTTCAATATTTTGAATAGA 19459 Query 65096 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 65155 |||| || || || ||| || || || |||| |||||| | || ||||| Sbjct 19460 TCCATTATTGTGGATGATAAGATTTTTCATATCTTCATCCCATAAATCAGCTTCAGTTAA 19519 Query 65156 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 65215 | ||| | | ||| ||||||| ||||| ||||| || ||||| |||| | || Sbjct 19520 ATCTCGTAACAAATGATGATTAACAACTTGGAATTCACCTGACAAGACTCGTCTTTGATA 19579 Query 65216 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 65275 ||| || ||| | ||||| | || |||||||||||||| ||||||||||| ||||| Sbjct 19580 AATGTTGGAAGTAAATGGTTCAAATGATTCATTATTTCCCAATATTTGAGCAGTGGATGC 19639 Query 65276 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCT 65333 ||| ||||| || || | |||| |||||||||||| ||||| | ||||| ||| Sbjct 19640 AGTTGGCATTGGAGCTAATAATAGGGAATTTCTAAGACC--ATGTTTGGCTATTTTTTCT 19697 Query 65334 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 65393 || || | |||||||||| | || | || ||| | Sbjct 19698 TTGAGTGACACCCAATTCCACAAGTCTGTGGGGGTTTTATTCCACATATCATATTGCAAT 19757 Query 65394 ATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 65452 ||||| | |||||| | || | ||| |||| || || || || | ||||||||||| Sbjct 19758 ATACCTTGACTGGCAGGAC-AGCCTTCATAAGTCTCATAGACGCCATACTTCTCAGCTAA 19816 Query 65453 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 65512 |||||||| || |||| ||| || |||||||| ||||| || || | | ||||| | Sbjct 19817 CTCACAACTGGCTTCTAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAATTT 19876 Query 65513 TTGTGCTTCCAGGCTATC-AAATGGATA--ATTTAAGAGAATAAACGCGTCTGCTAATCC 65569 |||| || || || || | ||| |||| || ||| || || |||||||| Sbjct 19877 AATTGCTGCCTCACTTTCGTAAGGTATACGCATTAA---AACAAATGCATCAGCTAATCC 19933 Query 65570 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 65629 ||| || ||||| ||||| |||| || ||| |||| ||| ||| || ||||| | || Sbjct 19934 TTGGACTCCAATTCCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCTCTGGCACTGG 19993 Query 65630 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACT-TTGACCACATCCT 65688 |||||||| | ||| ||||||||||| ||| |||||| || | || || |||| Sbjct 19994 GTAATAATTTACATCAATAATTTTATTTAGA-TTCTGAGTTATAGTCTTAGTAACTTCCT 20052 Query 65689 TCAGTTTGAGAAAATCAAA---TCGCTCATCTATTACAAACATGTTCAATGCAACAGATG 65745 | | |||| |||| | | | || || | |||||||| || || |||| |||| Sbjct 20053 TTAATTTGGTGAAATTATATGTTTTGTCCTCATTCACAAACATATTTAAAGCAATTGATG 20112 Query 65746 CCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGAT 65805 | ||||| || || || || |||| | | |||| || || |||||||| | | Sbjct 20113 CTAGATTGCACACAGCCACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCACAAGT 20172 Query 65806 TACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 65865 | || || || || || || || || | ||| || || ||| | || || | ||| |||| Sbjct 20173 TGCTGCATTTAATAGTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCTTTAT 20232 Query 65866 AAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 65925 |||| ||| ||||||| || ||||||| || | ||| ||||| |||||||| | ||| Sbjct 20233 AAAGCATGTATGGAGTTCCTGTTTCAACTTGTGCTTCGATAATAGCTTTCCAAAGAACTT 20292 Query 65926 GAGC-----CTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCG 65980 |||| ||| || || | ||||| |||| ||| |||||| Sbjct 20293 GAGCTCTCACTTGTTTCACGAAGCGACCCTCTT-----TTTCATATTTCTCATACAAAGC 20347 Query 65981 TTCGAACTCGTCTCCCCAAACATTGT-CCAATCCAGGACATTCATCCGGACACATCAACG 66039 ||| || || || |||| |||| | | | | |||||||||||||| || ||||| | Sbjct 20348 TTCAAATTCCTCACCCC-AACAGTCTGCTAGTCCAGGACATTCATGGGGGCACATGATAC 20406 Query 66040 ACCACTCTCCGTCAT--CCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 66096 ||| ||| | || | ||| |||| |||||| || | ||||| ||||| | ||| | Sbjct 20407 TCCAATCT---TGATTGCTTTCTACTCTTTTCATGAACAAGTCAGGTATCCATAAAGC-A 20462 Query 66097 TA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 66155 || |||| ||||||| | ||| || || || || |||||||| | ||| ||||| Sbjct 20463 TAGAATAGCTCTCTGGCACGGACTTCTTCTTTCCCAGTGTTCTTTTTCAAATCAAGGAAT 20522 Query 66156 GCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 66215 | | |||||| |||||| ||||| ||||||||||| | | || || | ||| || Sbjct 20523 TCAAATATATCAGCATGCCATGGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTTATTA 20582 Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 ||||| || |||| |||| ||| ||||| || |||||||| ||||| || | | |||| Sbjct 20583 CCTCCTTGGTCTACATATCGAGCAGTGTTGTTGTAAACTCTTAACATGGGTACTAGACCA 20642 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT--ATTACTAATTG 66333 || || |||||| || || | ||||| |||| |||| | ||| | | || || Sbjct 20643 TTAGAGACACCATTTGTACCAGCTATATAAGTTCCCTTTGCTCTAATGCAGT-GTACATG 20701 Query 66334 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 66393 | |||||||| || || || ||||| || | || ||| |||||||||| ||||| | Sbjct 20702 A-AGACCTATCCCACCAGCTGACTTAGAAATGAGGGCACATTGTTTTAACGTGTCATAAA 20760 Query 66394 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 66453 | ||||| || ||||||||| |||| | ||||| || ||| | ||| | || Sbjct 20761 TTCCCTCAATGCTATCATCCCTCATTGCTATAAGAAAGCATGAAGATAATTGTGGTCGTG 20820 Query 66454 TAGTTCCCGCATTAAATAAG-GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 66512 |||| | || | | | ||| || ||| || || ||||| ||||||| || || ||| Sbjct 20821 GAGTTGCTGC-TGAGAAAAGAGTTGGACTTGCATGTGTAAAATATTTTTCTGACAGAAGA 20879 Query 66513 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 66572 ||||| || | ||||| || || || | ||| ||||||| | || ||||| Sbjct 20880 TTGTAGGTGTTTATAGCCCCCTCGATGTCTTCTCCATGTATTCCTATAGAAACTCGCATG 20939 Query 66573 AACATGTGCTGAGGTCTTTC 66592 | ||| ||||| || ||||| Sbjct 20940 AGCATATGCTGTGGCCTTTC 20959 >seq1613 Length=46735 Score = 104 bits (114), Expect = 3e-17 Identities = 158/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||| ||| | || ||| || || | ||| ||||| | || ||||| | Sbjct 40318 CCTCATCTCTAGAAATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCTCGCTTCT 40377 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | |||||| || || ||||| ||||| ||||| || ||||| || || ||||||| Sbjct 40378 TCATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAATATGCCTTCAACAGCAGCAAAGG 40437 Query 36300 CAATAAGTCTCTCTCCATAACCGGC--ACTGTCATG-TATCCACTTTTGAGCCCAATCGG 36356 |||| | | ||| || | ||| ||| | || ||||||| | ||||| || | Sbjct 40438 CAATGATACGCTCAGCAAATGTGGCTGACTTGCTTGCAATCCACTGGAGGGCCCAGTCAG 40497 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399 ||||||| || ||||| |||| || || ||||||||||| || Sbjct 40498 CCTTCTTCTTCACACAGGGCAGGGTTTCAATAGCATTAAACAG 40540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658148324199000