Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2205 637 7e-178 seq2446 86.0 9e-12 seq1613 86.0 9e-12 >seq2205 Length=656796 Score = 637 bits (706), Expect = 7e-178 Identities = 1235/1796 (69%), Gaps = 34/1796 (2%) Strand=Plus/Plus Query 78696 CTTTATCTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 78755 ||| | |||| ||||| | ||||| || || | | | || || ||||| |||| Sbjct 19178 CTTAACCTTAGATTTGTCAACAGTGAACTGGATAGCATTTGCGGCTGGCTTCGTGCGTAA 19237 Query 78756 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTT 78815 |||||||||||||||||||| || | |||| | |||||||| ||| || | ||| Sbjct 19238 ATAGTACATTCCCGTTTTTAAGCCCATTTTCCACGCATAGAAATGAATAGATGTCAATTT 19297 Query 78816 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 78875 |||| | || || || | ||| ||||| | ||||| || ||||| || || || || Sbjct 19298 ACCATAATTTGGTTCAGCAACATGAATATTGAAGGATTGGCTCTGATCAATAAATGCCCC 19357 Query 78876 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AA 78934 ||||| |||||||||| ||| | || ||| | | |||||| | ||||||||| || Sbjct 19358 TCTGTCAGCAGCCATTTGTATTGTTGTTTTTACAGACACTTCCCAGACAGTTTTATATAA 19417 Query 78935 CTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAA 78991 || |||| |||||| |||| | || |||| ||||| |||||| || || | Sbjct 19418 GTCCCTTA-TATCTTTAGGAATTGCTTCAATATTTTGAATAGATCCATTATTGTGGATGA 19476 Query 78992 TCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 79051 | ||| || || ||||||| |||||| | || |||||| ||| | | ||| Sbjct 19477 TAAGATTTTTCATATCTTCATCCCATAAATCAGCTTCAGTTAAATCTCGTAACAAATGAT 19536 Query 79052 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATG 79111 ||||||| ||||| ||||| || ||||| |||| | ||||| || ||| ||| Sbjct 19537 GATTAACAACTTGGAATTCACCTGACAAGACTCGTCTTTGATAAATGTTGGAAGTAAATG 19596 Query 79112 GTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCA 79171 |||| | ||||||||||||||||| ||||||||||| ||||| |||||||| || || | Sbjct 19597 GTTCAAATGATTCATTATTTCCCAATATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTA 19656 Query 79172 CCAATAAACTATTTCTAAGACC--GTATGATCTGATTTTATCTTTTAGAGATTCCCAATC 79229 |||| |||||||||||| || || || ||||| ||||| || || |||||| Sbjct 19657 ATAATAGGGAATTTCTAAGACCATGTTTG-GCT-ATTTTTTCTTTGAGTGACACCCAATT 19714 Query 79230 CCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTA 79289 ||| | || | ||| |||||| | ||||||||| | ||||| | ||| || Sbjct 19715 CCACAAGTCTGTGGGGGTTTTATTCCACATATCATATTGCAATATACCTTGACTGGCAGG 19774 Query 79290 TGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAA 79349 | ||| || || ||||| || | ||| || ||||| |||||||| || |||| Sbjct 19775 ACAGCCTTCATAAGTCTCATAGACGCCATACTTCTCAGCTAACTCACAACTGGCTTCTAG 19834 Query 79350 TGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATC 79409 ||| || |||||||| ||||| || || | | ||| | | |||| | || || Sbjct 19835 TGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTAATTGCTGCCTCACTTTC 19894 Query 79410 -AAATGGATA--ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 79466 || | ||| |||| || ||| || || ||||||||||| || ||||| ||||| Sbjct 19895 GTAAGGTATACGCATTAA---AACAAATGCATCAGCTAATCCTTGGACTCCAATTCCGAT 19951 Query 79467 AGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 79526 |||| || ||| |||| || ||| || ||||| | || |||||||| | ||| || Sbjct 19952 GGGTCGGTGCCTCATATTTGAGTTTTTTGCCTCTGGCACTGGGTAATAATTTACATCAAT 20011 Query 79527 AATTTTATTGAGATTCCTGACTATTACT-TTGACCACATCCTTTAGTTTGAGAAAATCAA 79585 ||||||||| ||||| |||| | || | || || ||||||| |||| |||| | Sbjct 20012 AATTTTATTTAGATT-CTGAGTTATAGTCTTAGTAACTTCCTTTAATTTGGTGAAATTAT 20070 Query 79586 A----TCGTCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCT 79641 | | |||| || | |||||||| || || || | ||||| ||||| || || || Sbjct 20071 ATGTTTTGTCC-TCATTCACAAACATATTTAAAGCAATTGATGCTAGATTGCACACAGCC 20129 Query 79642 ACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTT 79701 || |||| | | |||| || ||||||||||| | ||| || || ||||| || Sbjct 20130 ACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCACAAGTTGCTGCATTTAATAGTA 20189 Query 79702 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTA 79761 || || || | ||| || || ||| | || || | ||| |||||||| ||| | ||||| Sbjct 20190 CCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCTTTATAAAGCATGTATGGAGTT 20249 Query 79762 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGAC 79821 || ||||||| || | ||| ||||| |||||||| | ||| |||| | | | | Sbjct 20250 CCTGTTTCAACTTGTGCTTCGATAATAGCTTTCCAAAGAACTTGAGCTCTCACTTGTTTC 20309 Query 79822 TTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACA 79881 | | | ||| |||| |||| ||| || ||| || || || |||||| Sbjct 20310 ACGAAGCGACCCTCTTTTTCATATTTCTCATACAAAGCTTCAAATTCCTCACCCCAACAG 20369 Query 79882 TCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTT--TA 79939 || ||| |||||||||||| | || ||||| | ||| ||| || | ||| || Sbjct 20370 TCTGCTAGTCCAGGACATTCATGGGGGCACATGATACTCCAATCTTGAT--TGCTTTCTA 20427 Query 79940 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGC 79998 ||| |||||| || | ||||| ||||| | ||| ||| ||||| ||||||| | Sbjct 20428 CTCTTTTCATGAACAAGTCAGGTATCCATAAAGC-ATAGAATAGCTCTCTGGCACGGACT 20486 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || || || || |||||||| | ||| ||||| | | ||||||| |||||| ||| Sbjct 20487 TCTTCTTTCCCAGTGTTCTTTTTCAAATCAAGGAATTCAAATATATCAGCATGCCATGGT 20546 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 80118 || ||||||||||| | | || |||| ||| || ||||| || |||| |||| ||| Sbjct 20547 TCTAAGTATATGGCAAATGCGCCGGGTCTTTTATTACCTCCTTGGTCTACATATCGAGCA 20606 Query 80119 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAG 80178 ||||| || |||||||| ||||| || | | |||||| || |||||| || || | Sbjct 20607 GTGTTGTTGTAAACTCTTAACATGGGTACTAGACCATTAGAGACACCATTTGTACCAGCT 20666 Query 80179 ATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTT 80236 ||||| |||| | || | ||| | | || ||| |||||||| || || || | Sbjct 20667 ATATAAGTTCCCTTTGCTCTAATGCAGT-GTACATGA-AGACCTATCCCACCAGCTGACT 20724 Query 80237 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCA 80296 |||| || | || ||| |||||||||| ||||| || ||||| ||||||||||| ||| Sbjct 20725 TAGAAATGAGGGCACATTGTTTTAACGTGTCATAAATTCCCTCAATGCTATCATCCCTCA 20784 Query 80297 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG-GTA 80355 | | ||||| || ||| | ||| | || |||| | || | | | ||| || Sbjct 20785 TTGCTATAAGAAAGCATGAAGATAATTGTGGTCGTGGAGTTGCTGC-TGAGAAAAGAGTT 20843 Query 80356 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 80415 ||| || || ||||| ||||||| ||||| |||||||| || | ||||| || Sbjct 20844 GGACTTGCATGTGTAAAATATTTTTCTGACAGAAGATTGTAGGTGTTTATAGCCCCCTCG 20903 Query 80416 ATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 || || | ||| ||||||| | || ||||| | ||| ||||| || ||||| Sbjct 20904 ATGTCTTCTCCATGTATTCCTATAGAAACTCGCATGAGCATATGCTGTGGCCTTTC 20959 >seq2446 Length=565066 Score = 86.0 bits (94), Expect = 9e-12 Identities = 242/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Minus Query 173693 ATGACTCCA--ATTAATCCCATGTTAGCAGAATCATGTGATTCTGTCAATAAGGCGTTTA 173750 ||||||||| |||| || ||||| || ||| | || | || || | | ||| | | Sbjct 540529 ATGACTCCAGTATTA--CCTATGTTGGCTGAAGCTTGCAAATCAGTGGAAATGGCAATGA 540472 Query 173751 AAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTC 173810 | |||| ||| |||||||| | || ||||||| || |||||||| |||||||| | Sbjct 540471 AGAAATGTCCTAACGGAATGTTCTCAGAGATCAAATATGACGGTGAAAGGGTACAAGTGC 540412 Query 173811 ATAAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATA 173870 ||||||| || |||||| | || |||| | ||||| || | | |||| Sbjct 540411 ATAAAAAAGGGAATGAGTTTAAATATTTCTCTAGAGCATTAAAACCTGTTATGGCACATA 540352 Query 173871 AAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCATAT 173930 |||| | || | || || || |||| |||||||| ||| | || | | || Sbjct 540351 AAGTCAGTCATTTTAAGGATTATTTACCACAAGCATTTCCAAAGGGGACCGATTTGATTC 540292 Query 173931 TGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTACCGC---TACCGTTTGGAAGTT 173987 | ||| ||||| || | | ||||| | ||| | | || | || ||||| | Sbjct 540291 TTGATGCTGAAGTTTTGATGGTAGATGTGAATACAGGAAAGCCTTTGCCATTTGGTACAC 540232 Query 173988 TAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACT 174047 ||||||| || ||| || |||| ||| | | | | ||| |||| |||||||||| Sbjct 540231 TAGGTATCCATAAACAGTCTGAATTCAAAGATGCACAAGTATGTCTGTTTGTGTTTGACT 540172 Query 174048 GTTTGTACT 174056 |||| |||| Sbjct 540171 GTTTATACT 540163 >seq1613 Length=46735 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 || |||| ||| ||||| || || ||||| || || ||||||||||| || ||||| | | Sbjct 41418 TTGGATAGATCGACTTCCTCAACGGTCCAGAACGAAGCCTCTGCCTTCTTGTACATTTCC 41477 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 ||||| ||| |||| || |||||||| || ||||| Sbjct 41478 CAGATATCAGGATACTGTATTGGGAATATTACAAA 41512 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||| || || |||| || || || || ||||| ||||||||||| ||||| || || Sbjct 40783 TACATCTCAGAGTGAACATTCTCCATAGCAATCTGGAATCCGTAGAAGCATCTGGCTTCT 40842 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 || | ||||| ||| | || ||||| | || || ||||| || || || ||| Sbjct 40843 GTCACTTGCACCTCTTGGGAGAAGCGTTCCACCAAGTTCTCATTGACAATGCCATCAGAC 40902 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGT 50406 || ||||| || |||| |||||||| || || ||| Sbjct 40903 GCAGCAAAGAAAGCCAGCACATGTTTGATGAAGTGT 40938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718242089379000