Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq806 111 1e-19 >seq806 Length=81131 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||| || | |||| ||||| || | ||||||||| ||| Sbjct 47954 CCACCACGTAGACGAAGTACCAAGTGAAGAGTGGATTCCTTCTGAATATTGTAATCAGAC 48013 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || |||||||| |||||||| || |||||||||||||| || | || Sbjct 48014 AAGGTTCGCCCATCCTCCAATTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGA 48073 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || ||| || ||||||| | ||| |||||| | || || Sbjct 48074 ATACCTTCCTTGTC-CTGAATTTTAGCTTTGACATTTTCAATTGTGTCAGAGGGTTCAAC 48132 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || ||||| || || || | |||||| || || |||||||| Sbjct 48133 TTCTAGTGTGATAGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 48180 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | |||||||||||| | || ||| |||| || | || || || || ||| Sbjct 45908 TCCTTTTGAATATTGTAATCGGAAAGAGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAA 45967 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||| |||||||| | || | || ||||| || || ||||||| | Sbjct 45968 ATCAATCTTTGTTGATCTGGTGGAATTCCCTCTTTGTCTTGAATTTTGGCTTTGACATTT 46027 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| |||||| | || || |||| || || ||||| || |||| |||||||||| Sbjct 46028 TCAATTGTGTCAGAGGGTTCAACTTCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACA 46087 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 46088 AAAATTTGCAT 46098 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||| || || ||||| ||| | || ||||| |||||||||||||| Sbjct 48446 TCTTTTTGGATATTGTAGTCTGATAATGTGCGTCCATCTTCCAACTGTTTGCCGGCAAAG 48505 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||||||| || ||||| | || | ||| || || || ||| |||| || | Sbjct 48506 ATCAATCGTTGCTGATCAGGTGGGATACCCTCCTTATCCTGGATTTTGGCTTTAACATTT 48565 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | |||||| || ||| || |||| || || ||||| || || | ||||| || Sbjct 48566 TCGATTGTGTCAGAAGGCTCAACCTCTAAAGTGATGGTTTTGCCAGTCAATGTTTTTACG 48625 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 48626 AAAATTTGCAT 48636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381355772372550