Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2205 596 2e-165 seq1613 107 3e-18 >seq2205 Length=656796 Score = 596 bits (660), Expect = 2e-165 Identities = 1197/1755 (68%), Gaps = 33/1755 (2%) Strand=Plus/Plus Query 70821 TGCGGCT---TTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTA 70877 ||||||| ||||| |||| ||||||||| || ||||||| || | |||| | || Sbjct 19217 TGCGGCTGGCTTCGTGCGTAAATAGTACATTCCCGTTTTTAAGCCCATTTTCCACGCATA 19276 Query 70878 AAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTG 70937 ||||| ||| || | ||| ||| | || || || | |||||||| | || || Sbjct 19277 GAAATGAATAGATGTCAATTTACCATAATTTGGTTCAGCAACATGAATATTGAAGGATTG 19336 Query 70938 ACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAAT 70997 || ||||| || || || || ||||| |||||||||| ||| | || ||| | | Sbjct 19337 GCTCTGATCAATAAATGCCCCTCTGTCAGCAGCCATTTGTATTGTTGTTTTTACAGACAC 19396 Query 70998 TTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAA 71053 |||||| | ||||||||| || || |||| |||||| |||| | || |||| |||| Sbjct 19397 TTCCCAGACAGTTTTATATAAGTCCCTTA-TATCTTTAGGAATTGCTTCAATATTTTGAA 19455 Query 71054 TGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGG 71113 | |||||| || || || |||||| || ||||||| |||||| | || | Sbjct 19456 TAGATCCATTATTGTGGATGATAAGATTTTTCATATCTTCATCCCATAAATCAGCTTCAG 19515 Query 71114 TTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAG 71173 ||||| ||| | | |||| ||||||| ||||| ||||| || ||||| |||| | Sbjct 19516 TTAAATCTCGTAACAAATGATGATTAACAACTTGGAATTCACCTGACAAGACTCGTCTTT 19575 Query 71174 TGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTG 71233 ||||| || ||| | ||||| | ||| |||||||||||||| ||||||||||| | Sbjct 19576 GATAAATGTTGGAAGTAAATGGTTCAAATGATTCATTATTTCCCAATATTTGAGCAGTGG 19635 Query 71234 ATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGG--ATTTT 71291 ||||||| ||||| || || | ||||| |||||||||||||||| | || ||||| Sbjct 19636 ATGCAGTTGGCATTGGAGCTAATAATAGGGAATTTCTAAGACCATGT--TTGGCTATTTT 19693 Query 71292 ATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNN 71351 ||||| || || |||||||||| | || | || Sbjct 19694 TTCTTTGAGTGACACCCAATTCCACAAGTCTGTGGGGGTTTTATTCCACATATCATATTG 19753 Query 71352 NNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGC 71411 || || | ||| || | ||| |||| || || || || | || || || Sbjct 19754 CAATATACCTTGACTGGCAGGACAGCCTTCATAAGTCTCATAGACGCCATACTTCTCAGC 19813 Query 71412 TAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAG 71471 || |||||||| || |||| ||| ||||||||||| ||||| || || | | ||| | Sbjct 19814 TAACTCACAACTGGCTTCTAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAA 19873 Query 71472 ATCTTGTGCTTCCGGGCTATCAAATGG-ATAAT--TTAAGAGAATAAACGCGTCTGCTAA 71528 | |||| || || || | || ||| |||| || ||| || || ||||| Sbjct 19874 TTTAATTGCTGCCTCACTTTCGTAAGGTATACGCATTAA---AACAAATGCATCAGCTAA 19930 Query 71529 TCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAAT 71588 |||||| || ||||| ||||| |||| ||| ||| |||| || ||| || ||||| | Sbjct 19931 TCCTTGGACTCCAATTCCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCTCTGGCAC 19990 Query 71589 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCA-CAT 71647 || |||||||| | ||| ||||||||||| ||||| |||| | || | | | | | | Sbjct 19991 TGGGTAATAATTTACATCAATAATTTTATTTAGATT-CTGAGTTATAGTCTTAGTAACTT 20049 Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCT--ATT-ACAAACACGTTCAAGGCAACAG 71704 |||||| |||| |||| | || | || ||| ||||||| || || |||| | Sbjct 20050 CCTTTAATTTGGTGAAATTATATGTTTTGTCCTCATTCACAAACATATTTAAAGCAATTG 20109 Query 71705 ATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAA 71764 |||| ||||| || || || || |||| | || |||| || |||||||||||| | Sbjct 20110 ATGCTAGATTGCACACAGCCACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCACA 20169 Query 71765 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 71824 || || || || || || || || || | ||| || || ||| | || || | ||| | Sbjct 20170 AGTTGCTGCATTTAATAGTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCTT 20229 Query 71825 TATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 71884 ||||||| || | ||||| || ||||||| || | ||| ||||| |||||||| | | Sbjct 20230 TATAAAGCATGTATGGAGTTCCTGTTTCAACTTGTGCTTCGATAATAGCTTTCCAAAGAA 20289 Query 71885 CTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTT 71944 || |||| | | | ||| | | | ||| |||| |||| ||| || || Sbjct 20290 CTTGAGCTCTCACTTGTTTCACGAAGCGACCCTCTTTTTCATATTTCTCATACAAAGCTT 20349 Query 71945 CGAACTCGTCTCCCCAAGCATTGT-CTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 | || || || |||||| || | | ||| |||||||||||||| || ||||| | | Sbjct 20350 CAAATTCCTCACCCCAA-CAGTCTGCTAGTCCAGGACATTCATGGGGGCACATGATACTC 20408 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 72062 || ||| || | ||||| |||||| || | ||||| ||||| | ||| ||| || Sbjct 20409 CAATCTTGATTGCTTTCTACTCTTTTCATGAACAAGTCAGGTATCCATAAAGC-ATAGAA 20467 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 ||| ||||||| | || || || || || |||||||| | ||| ||||| | | Sbjct 20468 TAGCTCTCTGGCACGGACTTCTTCTTTCCCAGTGTTCTTTTTCAAATCAAGGAATTCAAA 20527 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 ||||||| |||||| ||||| ||||||||||| | | || || | ||| || ||||| Sbjct 20528 TATATCAGCATGCCATGGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTTATTACCTCC 20587 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 || |||| |||| ||| ||||| || |||||||| ||||| || | | |||||| || Sbjct 20588 TTGGTCTACATATCGAGCAGTGTTGTTGTAAACTCTTAACATGGGTACTAGACCATTAGA 20647 Query 72243 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGA 72300 ||||||| || || | ||||| |||| | || | ||| | || || ||| ||| Sbjct 20648 GACACCATTTGTACCAGCTATATAAGTTCCCTTTGCTCTAATGCAGTG-TACATGA-AGA 20705 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 ||||| || || || ||||| || | || ||| |||||||||| ||||| || ||| Sbjct 20706 CCTATCCCACCAGCTGACTTAGAAATGAGGGCACATTGTTTTAACGTGTCATAAATTCCC 20765 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420 || || ||||||||| |||| | ||||| || ||| | ||| | || |||| Sbjct 20766 TCAATGCTATCATCCCTCATTGCTATAAGAAAGCATGAAGATAATTGTGGTCGTGGAGTT 20825 Query 72421 CCCGCATTAAATAAG-GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479 | || | | | ||| || ||| || || ||||| ||||||| ||||| |||||||| Sbjct 20826 GCTGC-TGAGAAAAGAGTTGGACTTGCATGTGTAAAATATTTTTCTGACAGAAGATTGTA 20884 Query 72480 CGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539 || | ||||| || || || | ||||||||||| | || ||||| | ||| Sbjct 20885 GGTGTTTATAGCCCCCTCGATGTCTTCTCCATGTATTCCTATAGAAACTCGCATGAGCAT 20944 Query 72540 ATGCTGAGGTCTTTC 72554 |||||| || ||||| Sbjct 20945 ATGCTGTGGCCTTTC 20959 >seq1613 Length=46735 Score = 107 bits (118), Expect = 3e-18 Identities = 159/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||| ||| | || ||| || || | ||| ||||| | || ||||| | Sbjct 40318 CCTCATCTCTAGAAATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCTCGCTTCT 40377 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | |||||| || || ||||| ||||| ||||| || ||||| || || ||||||| Sbjct 40378 TCATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAATATGCCTTCAACAGCAGCAAAGG 40437 Query 42207 CAATAAGTCTCTCTCCATAACCGGC--ACTGTCATG-TATCCACTTTTGAGCCCAATCGG 42263 |||| | | ||| || | ||| ||| | || ||||||| | ||||| || | Sbjct 40438 CAATGATACGCTCAGCAAATGTGGCTGACTTGCTTGCAATCCACTGGAGGGCCCAGTCAG 40497 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 ||||||| || ||||| |||| ||||| || |||||||| || Sbjct 40498 CCTTCTTCTTCACACAGGGCAGGGTTTCAATAGCATTAAACAG 40540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671114242011000