Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2898 176 5e-39 seq2205 136 4e-27 seq806 136 4e-27 seq1608 131 2e-25 >seq2898 Length=111689 Score = 176 bits (194), Expect = 5e-39 Identities = 338/493 (69%), Gaps = 4/493 (1%) Strand=Plus/Plus Query 19411 GGGTTCGCGCCATTGCCGCCTGGAAACTCCCAATCGATATCGACGCCATCGAAGAATTTC 19470 ||||| ||||| || || || || |||||||| || || || || ||||| ||||||||| Sbjct 27893 GGGTTAGCGCCCTTACCACCAGGGAACTCCCAGTCAATGTCCACTCCATCAAAGAATTTC 27952 Query 19471 CACGTTTCTAGATACTCTTGGACCGAATCGATAAACGTCTGCCGTACGCTCTTGTC-GTG 19529 || ||||| || | || | || || || | || || || |||||| ||| Sbjct 27953 CAGGTTTCAAGGAAGTCCTTCACAGAGTCAACGAAGCGCTTCCTCTTAACCTTGTCAGTG 28012 Query 19530 CATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCACTTTTAGATG 19589 | | | | ||||| || | || ||||| || || | ||||||| | || || | Sbjct 28013 AAGAAGA-AGAATGGATCAGCCAGGGTCCAACCACCAACGGAAGGTAAGATCTTCAGGTC 28071 Query 19590 AGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCA 19649 ||| | ||| ||| ||| || || || || || || ||||| ||||||||||| Sbjct 28072 AGGTCTTGCCTGTTTCAACATCATCAGCTGTCCGAAATTACCCTTGTAGGGTTCGTTCCA 28131 Query 19650 TG-CGCTGACACCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCACTT 19708 | ||| | ||| ||||| |||||||| | || |||||||| |||||||| | |||| Sbjct 28132 GGACGC-CAGACCCTTTTGTGGTTTCTGAAGAGCTGCCCAAGGGTCGTGAATCGATACTT 28190 Query 19709 TGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGTTT 19768 ||||||| | | || || || ||||||| |||| ||| ||||| || || Sbjct 28191 TGAAGTCCTCCCTGCCACTGCAGGATCGTTGCAGAGCTTGGAAGCTGCCTTCGATTTCTT 28250 Query 19769 TGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACAACAAATGCG 19828 | | || |||||||| || |||||||| || || | ||||||||||| | ||| | Sbjct 28251 TCAAACTGTCGTTGATGCCATCTCCACCGCAGATTGGGATGAAACCGTACAGAAGATGGG 28310 Query 19829 ACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACACCCCATTCGA 19888 | ||||| |||| || |||||||| |||| | || || || |||||||||| Sbjct 28311 TAAGATTCGGGATGGGTACGCGGTCGACGGGGAACTTCCTGGGGTAGACGCCCCATTCGA 28370 Query 19889 CAAAGTATGCACC 19901 | ||||| || || Sbjct 28371 CGAAGTAAGCGCC 28383 >seq2205 Length=656796 Score = 136 bits (150), Expect = 4e-27 Identities = 300/444 (68%), Gaps = 7/444 (2%) Strand=Plus/Plus Query 156777 AACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGG 156836 ||||||| || || || ||| ||| | |||||| ||||||| ||| ||| || | Sbjct 19822 AACTGGCTTCTAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTAATTG 19881 Query 156837 CAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGC 156896 | || || || |||| ||||| |||| | |||||||||||| || || ||||| | | Sbjct 19882 CTGCCTCACTTTCGTAAGGTATACGCATTAAAACAAATGCATCAGCTAATCCTTGGACTC 19941 Query 156897 CAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAAT 156956 |||| |||||||| || || | |||||| || |||||||| | | ||||| ||| Sbjct 19942 CAATTCCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCTCTGGCACTGGGTAATAAT 20001 Query 156957 TGCGATCAATAATTTTATTCAAACTATCCACTACATGTTTGACCACAGTGTGCAA-TAGT 157015 | ||||||||||||||| | | | | || | || || | || | | Sbjct 20002 TTACATCAATAATTTTATTTAGATTCTGAGTTATAGTCTTAGTAACTTCCTTTAATTTGG 20061 Query 157016 TGAAAATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTA 157072 || |||| | | | | || | ||| | | | |||| | ||||| || |||||||| Sbjct 20062 TG-AAATTATATGTTTTGTCCTCATTCACAAACATATTTAAAGCAATTGATGCTAGATTG 20120 Query 157073 CATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCAT 157132 || || || ||| || | | | |||| ||| ||||| | ||||| ||||||||| Sbjct 20121 CACACAGCCACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCACAAGTTGCTGCAT 20180 Query 157133 TTTATCAATCCGCAA-TTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACAT 157191 || || | | | ||| || |||| |||||||| | ||||| | || || || | ||| Sbjct 20181 TTAAT-AGTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCTTTATAAAGCAT 20239 Query 157192 GTACGGTGTGCCGGTTTCGGCTTG 157215 ||| || || || ||||| |||| Sbjct 20240 GTATGGAGTTCCTGTTTCAACTTG 20263 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 ||||| || | ||| ||||| || || |||||||| || | ||||| ||||| Sbjct 548957 ACTAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGAGAGTGTGCGGCCATCTTCC 548898 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||||| || |||| ||||||||||| || || || ||||| |||||||| | Sbjct 548897 AACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGGGATGCCCTCTTTGTCCTGA 548838 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || ||| || | | || | ||||||| | || || || | || | ||||| Sbjct 548837 ATCTTTGCCTTCACATTCTCAATAGTGTCCGAAGCCTCCACCTCGAGGGTGATGGTCTTA 548778 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || |||| ||||||||||| |||||||| Sbjct 548777 CCCGTCAGGGTTTTTACGAAGATTTGCAT 548749 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || |||| || ||||| ||||| ||||| || || | |||| ||||| Sbjct 546129 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTATAGTCTGAAAGAGTGCGGCCATCTTCC 546188 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||||| || |||| ||||||||||| || || || ||||| |||||||| Sbjct 546189 AACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGGAATGCCCTCTTTGTCCTGG 546248 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 |||||| |||| | || | ||||| | | || || || | || | ||||| Sbjct 546249 ATTTTTGCCTTTACATTCTCAATAGTGTCTGAAGCCTCCACCTCGAGGGTGATGGTCTTA 546308 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || |||| ||||||||||| || ||||| Sbjct 546309 CCCGTCAGGGTTTTTACGAAGATCTGCAT 546337 >seq806 Length=81131 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || |||||||| ||||| |||| |||||||||||||| || ||||| || Sbjct 48410 CCTCCGCGCAAACGCAATACTAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGAT 48469 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||||| || | ||||| | ||||| || ||| |||||| ||||||||||| || || Sbjct 48470 AATGTGCGTCCA-TCTTCCAACTGTTTGCCGGCAAAGATCAATCGTTGCTGATCAGGTGG 48528 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || || || ||||| ||| | | ||| | ||||| | || || || Sbjct 48529 GATACCCTCCTTATCCTGGATTTTGGCTTTAACATTTTCGATTGTGTCAGAAGGCTCAAC 48588 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || ||||| ||||||||||||||||| ||||||||| Sbjct 48589 CTCTAAAGTGATGGTTTTGCCAGTCAATGTTTTTACGAAAATTTGCATA 48637 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||||||||||| ||| ||||| ||||| || ||||||||| | |||| |||||| Sbjct 45889 AACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCGGAAAGAGTGCGTCCGTCTTC 45948 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 || || |||||||| | |||| | ||| ||||| || || || || |||||||| Sbjct 45949 AAGCTGCTTACCAGCGAAAATCAATCTTTGTTGATCTGGTGGAATTCCCTCTTTGTCTTG 46008 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 |||||| ||| | | ||| | ||||| | |||||| ||||| | || | || || Sbjct 46009 AATTTTGGCTTTGACATTTTCAATTGTGTCAGAGGGTTCAACTTCTAATGTAATGGTTTT 46068 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || ||||| || || |||||||| Sbjct 46069 ACCAGTTAAAGTTTTCACAAAAATTTGCAT 46098 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||||| || | ||||| ||||| || || || || ||||| ||| Sbjct 48638 CCACCTCTGAGACGCAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAA 48697 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | ||||| | |||||| || || |||||| | || ||||||||||| Sbjct 48698 AGAGTGCGTCCA-TCTTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGG 48756 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| || || ||||||| ||| | | ||| | || || | |||||| || Sbjct 48757 AATGCCTTCCTTATCTTGAATTTTTGCTTTAACGTTTTCAATGGTATCAGAGGGTTCCAC 48816 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || ||||| || || || || || ||||| Sbjct 48817 CTCTAATGTTATGGTTTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 48864 >seq1608 Length=32450 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||||| ||| | |||| |||||||||||||| |||||||| || | Sbjct 29618 CCACCACGGAGACGCAGAACAAGGTGAAGCGTAGATTCTTTTTGGATGTTGTAGTCAGAC 29559 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| |||||| | || || ||||| ||||||| || |||||||| || || Sbjct 29558 AGTGTGCGACCGTCTTCTAACTGCTTTCCAGCGAAGATCAGTCGCTGCTGATCTGGGGGA 29499 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| |||||| ||||| | ||| | ||||| | || || ||| Sbjct 29498 ATGCCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTGTCGGATGGCTCAACT 29439 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || || || ||||| ||||| || || || ||||| Sbjct 29438 TCAAGGGTGATAGTTTTACCCGTCAAGGTTTTCACAAAAATCTGCAT 29392 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||||| || || |||| ||||||||||| || ||||||||||| Sbjct 30758 CCACCTCGCAGACGCAGGACCAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAATCAGAA 30699 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||||| || || || |||||| |||| ||||| ||||| || || || Sbjct 30698 AGGGTACGCCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 30639 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || ||||| || ||| || ||| | | || | ||||| | || || ||| Sbjct 30638 ATTCCCTCTTTATCTTGAATCTTAGCTTTCACATTCTCAATAGTGTCAGAAGGCTCCACT 30579 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | || || || || | || || ||||| || |||||| Sbjct 30578 TCAAGAGTGATGGTTTTACCAGTGAGGGTCTTCACGAAAATCTGCATA 30531 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||||| || | |||| || ||||| ||||| |||||||| || Sbjct 29846 CCACCTCGCAGACGCAGGACCAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCAGAG 29787 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| | ||||| || || || || ||| ||||||| | |||||| || || || Sbjct 29786 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGTGGG 29727 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||||| || | | || | || || | || || ||| Sbjct 29726 ATACCTTCTTTGTCTTGAATTTTTGCCTTAACATTCTCGATAGTATCTGAAGGCTCGACT 29667 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || || | ||||| ||||| || |||||| Sbjct 29666 TCGAGGGTAATTGTCTTACCAGTAAGCGTTTTAACGAAAATCTGCATA 29619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506995545402000