Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2205 145 1e-29 seq2965 132 7e-26 seq2160 114 2e-20 seq1422 105 1e-17 seq1613 86.0 9e-12 >seq2205 Length=656796 Score = 145 bits (160), Expect = 1e-29 Identities = 928/1471 (63%), Gaps = 54/1471 (4%) Strand=Plus/Minus Query 96824 TGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACGATACGTTACACAGGGCG 96882 ||| ||||| || ||| | ||| | ||||| || || | ||||| || || || | Sbjct 20642 TGGTCTAGTACCCATGTTAAGAGTTTACAACAACACTG-CTCGATATGTAGACCAAGGAG 20584 Query 96883 GCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTG 96942 | |||||| | || ||||| | ||| | ||||| ||||| ||||| || || | |||| Sbjct 20583 GTAATAAAAGACCCGGCGCATTTGCCATATACTTAGAACCATGGCATGCTGATATATTTG 20524 Query 96943 ACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTT 97002 | || | || || || ||| |||| ||||| | || ||||| || | || | Sbjct 20523 AATTCCTTGATTTGAAAAAGAACACTGGGAAAGAAGAAGTCCGTGCCAGAGAGCTATTCT 20464 Query 97003 ATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCC 97062 |||| | ||| | || || ||||||||||| | || | | | | ||||| Sbjct 20463 ATGCTTTATGGATACCTGACTTGTTCATGAAAAGAGTAGAAAGCAATCAAGATTGGAGTA 20404 Query 97063 TAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCA 97122 | ||||||||| | | || || || | || || ||||| || || ||||| || Sbjct 20403 TCATGTGCCCCCATGAATGTCCTGGACTAGCAGACTGTTGGGGTGAGGAATTTGAAGCTT 20344 Query 97123 AGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGT 97182 ||| | || || ||||||| || | ||||| || ||| || | || || | Sbjct 20343 TGTATGAGAAATATGAAAAAGAGGGTCGCTTCGTGAAACAAGTGAGAGCTCAAGTTCTTT 20284 Query 97183 GGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATA 97242 |||| || || | || || || || || |||||||| ||||| || || || ||| Sbjct 20283 GGAAAGCTATTATCGAAGCACAAGTTGAAACAGGAACTCCATACATGCTTTATAAAGATT 20224 Query 97243 CCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCA 97302 | ||| | || ||||||||| ||||||| || || || || ||| |||||| Sbjct 20223 CATGCAATAGAAAAAGCAACCAAAAGAACTTGGGTACTATTAAATGCAGCAACTTGTGCA 20164 Query 97303 CGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCA 97362 | ||||||||||| ||| |||| | || || ||| || ||| ||| ||||| | Sbjct 20163 CTGAAATTGTAGAATACACCTCATCAGATGAAGTGGCTGTGTGCAATCTAGCATCAATTG 20104 Query 97363 ATCTGCCCAAGTTTGT---AGAGGGTAAAGTGTTTAATCTCAACCTATTGGCAAAGACGG 97419 | | | |||||| |||| ||| | |||| ||| | ||| || || | Sbjct 20103 CTTTAAATATGTTTGTGAATGAGGACAAAACATATAATTTCACCAAATT--AAAGGAAGT 20046 Query 97420 TGC---GTCTGGTGACTAGGAATCTAAACAAGATTATCGACAATGCACTCTAT--CCCA- 97473 | | | || | ||| ||||||||| || ||||| | ||| | ||| |||| Sbjct 20045 TACTAAGACT-ATAACTCAGAATCTAAATAAAATTATTG---ATGTAAATTATTACCCAG 19990 Query 97474 TTCCCTCGGCTGCCAAGTCAAACTTTAAGCACCGACCCATCGGTATAGGAGTGCAAGGCT 97533 | || ||| || ||||| | | ||||||||||||||| || ||||| ||||| | Sbjct 19989 TGCCAGAGGCAAAAAACTCAAATATGAGGCACCGACCCATCGGAATTGGAGTCCAAGGAT 19930 Query 97534 ACGCAGACGCTCTGGCCATGATGGGTATAGCCTAC------GAGGACTCGATGCAGTTGA 97587 || || || | | | ||| ||||| | ||| |||| | || | || | Sbjct 19929 TAGCTGATGCATTTGTTTTAATGCGTATACCTTACGAAAGTGAGGCAGCAATTAAATTAA 19870 Query 97588 ATCGTGACATTTTCGAAACCATCTACCATGCAGCACTGACGGAGAGTTGCCAACTGGC-C 97646 ||| | || || ||||| || || ||| ||||| | ||||| | | || Sbjct 19869 ATCAACAAATATTTGAAACAATTTATTATGGGGCACTAGAAGCCAGTTGTGAGTTAGCTG 19810 Query 97647 AGAGTGCACGGAGTCTACGAATCGTACCACGGTAGCCCGACCAGTCGTGGAGAGTTGCAC 97706 ||| | | || ||||| || | || | || | || |||||| || ||||| Sbjct 19809 AGA-AGTATGGCGTCTATGAGACTTATGAAGGCTGTCCTGCCAGTCAAGGTATATTGCAA 19751 Query 97707 TTCGACCGATACTCGGTGCACAGC-----CAAAAGTGTG--ACTGGTCATCGTTGCGCAA 97759 | |||| || | | | || | |||| | ||| || | ||| Sbjct 19750 T----ATGATATGTGGAATAAAACCCCCACAGACTTGTGGAATTGG---GTGTCACTCAA 19698 Query 97760 AG---ACATTGCTCGGTACGGTTTGAGAAACTCTTTGCTGGTGGCACCGATGCCCACGGC 97816 || | || || | ||| | ||||| || | | | || || ||||| || || Sbjct 19697 AGAAAAAATAGCCAAACATGGTCTTAGAAATTCCCTATTATTAGCTCCAATGCCAACTGC 19638 Query 97817 TACCACTTCCCAAGTGTTTGGCAATGCTGAATCTTTTGAACCGTTCACGTCAAACATGTA 97876 ||||| | ||| | || || ||| |||||| |||||||| || || || ||||| || Sbjct 19637 ATCCACTGCTCAAATATTGGGAAATAATGAATCATTTGAACCATTTACTTCCAACATTTA 19578 Query 97877 CCAGAGACGCACCCAGTCTGGAGAGTTTCAA-TTGACCAACGTGCACTTGGTTCGAGACT 97935 || ||||| | ||| || || || ||| ||| | | | || ||| | ||||| | Sbjct 19577 TCAAAGACGAGTCTTGTCAGGTGAATTCCAAGTTGTTAATCAT-CATTTGTTACGAGATT 19519 Query 97936 TGGAAC---GGCTCAATCTGTGGAACGATGACATGGCCCAGTTGATCATGTACAACAATG 97992 | ||| ||| || | ||| | || || ||| | | ||||| |||| |||| Sbjct 19518 T--AACTGAAGCT-GATTTATGGGATGAAGATATGAAAAATCTTATCATCCACAATAATG 19462 Query 97993 GGTCCATTCAAAACATT--ACCATCATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGT 98050 | || |||||||| ||| | || || || |||| | | | || || ||||| Sbjct 19461 GATCTATTCAAAATATTGAAGCA--ATTCCTAAAGATATAAGGGACTTATATAAAACTGT 19404 Query 98051 CTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGA 98110 |||||| | | || || || | |||||||| |||||||| | | ||||| Sbjct 19403 CTGGGAAGTGTCTGTAAAAACAACAATACAAATGGCTGCTGACAGAGGGGCATTTATTGA 19344 Query 98111 CCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGAT 98170 ||||| ||||| |||||| | | ||||| || || | || || |||| || || Sbjct 19343 TCAGAGCCAATCCTTCAATATTCATGTTGCTGAACCAAATTATGGTAAATTGACATCTAT 19284 Query 98171 ACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTC 98230 || || || || ||||| | |||| | || ||||| ||||||||| | | || ||| | Sbjct 19283 TCATTTCTATGCGTGGAAAATGGGCTTAAAAACGGGAATGTACTATTTACGCACGAAGCC 19224 Query 98231 GGCCACCAATGCCATACCATTTACGGTGGAC 98261 ||| | ||||| || | || || || ||| Sbjct 19223 AGCCGCAAATGCTATCCAGTTCACTGTTGAC 19193 >seq2965 Length=414427 Score = 132 bits (146), Expect = 7e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 126746 TACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTTTTGT 126805 |||| || || ||||| || || ||| ||||||||||||||||| || ||||| |||| Sbjct 153388 TACCAAGCCTAATGCCACTCGGGTGGAGTGCGCTCTTGTCTCCGGGCACCGTGTTCTTGT 153329 Query 126806 TGCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGCCGGTGCTCCTGCGAGTCCCACAC 126865 |||| ||||| ||||||||||| | ||| || || || || || || | ||| || ||| Sbjct 153328 TGCAGGCGATGCTGCACAGTTCTAAGATACGTTCGGCGGGAGCGCCAGTGAGGCCAGCAC 153269 Query 126866 TGCGCAAATCCACTAGAATCAGATGCACATCGGTACCGCCAGTGGTGACGGTGTAGCCTC 126925 |||||| || || || |||| ||||| ||||| || || || | ||| |||||| | Sbjct 153268 TGCGCATGTCGACGAGGATCAAGTGCACCTCGGTGCCACCGGTCGCGACCTCGTAGCCAC 153209 Query 126926 GTGAAACGAGTCC 126938 | || | ||||| Sbjct 153208 GGGACATCAGTCC 153196 Score = 96.9 bits (106), Expect = 5e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 127204 GCAATCAAGCCCGCAATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCA 127263 |||| || ||| | || || || ||||||||||||| ||| | || | | || || Sbjct 152408 GCAACCAGGCCAGAGATATGCGCCATATCGGCCATCAACAACGCTCCATTTTCGTCAGCG 152349 Query 127264 ATCTCTCGGAATCGTCTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATT 127323 |||| ||||| || | |||||||||| |||| ||||| || | || || || || Sbjct 152348 ATCTGACGGAAACGCTTGTAGTCCAAGCATCGAGAGTAGCAGCTAATACCAGCGATAATC 152289 Query 127324 AGCCTAGGTTTGAATAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTC 127383 | | ||||||||| | | ||| | ||||| || ||| ||||||| | | |||||| Sbjct 152288 AAACGAGGTTTGAACAACCTCGCAGTTTCGGCCAGCTTGTCATAGTCTATTAAACCAGTC 152229 Query 127384 TGAGGATCCACCT 127396 | ||||||||||| Sbjct 152228 TTAGGATCCACCT 152216 >seq2160 Length=267674 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 49796 ACCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAG 49855 || ||||||||||| ||||| ||||| |||||||| | |||| || | || || || Sbjct 201177 ACAGTGGAGCCTCCAATGTTCCTATATATGATGGCATATATGATCACAAATGTTATAGAA 201118 Query 49856 CAGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGTGC 49915 || | ||||| ||||| ||||| |||||||| |||||||||||| ||||| | ||| Sbjct 201117 CAAACATTTTATGTGTATCAAGCCTGCACCGTTAACCATGGCTACAGTCCAGAAATATGC 201058 Query 49916 CACAACATTAGCCAGTACGATGA 49938 |||||||||||| || ||||| Sbjct 201057 CACAACATTAGCAGTTATGATGA 201035 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 49796 ACCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAG 49855 || ||||||||||| ||||| ||||| |||||||| | |||| || | || || || Sbjct 203433 ACAGTGGAGCCTCCAATGTTCCTATATATGATGGCATATATGATCACAAATGTTATAGAA 203374 Query 49856 CAGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGTGC 49915 || | ||||| ||||| ||||| |||||||| |||||||||||| ||||| | ||| Sbjct 203373 CAAACATTTTATGTGTATCAAGCCTGCACCGTTAACCATGGCTACAGTCCAGAAATATGC 203314 Query 49916 CACAACATTAGCCAGTACGATGA 49938 |||||||||||| || ||||| Sbjct 203313 CACAACATTAGCAGTTATGATGA 203291 Score = 107 bits (118), Expect = 3e-18 Identities = 181/261 (69%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 50341 CCGATCCTACCCCATCATGTTTGCAATCAATACGAGTCTAATGATTGCGGCCACATTGTA 50400 |||||||| | | ||||||||||| ||||||||| || ||| | ||||||||||| Sbjct 193215 CCGATCCTTCACAATCATGTTTGCGATCAATACGGTCCTCATGTTCTTAGCCACATTGTA 193156 Query 50401 CACGATCCTATTCCTAAAATGGCAAACTCGACCAGAGCAAAAATCCCTCAAAGAGACTGG 50460 ||| | | ||||| || ||||| || | || || ||||| || || || || | || Sbjct 193155 CACTGTGATCTTCCTCAAGTGGCAGACGAGGCCCGAACAAAAGTCTCTGAAGGAAGCGGG 193096 Query 50461 CCTCAAGAATGCACTCGGAGACTTTTTCGATTTGGAAAACATC---AACACTACCCTGAA 50517 ||||||| | || |||||| |||||| | | || ||| | |||| | | Sbjct 193095 AGTCAAGAACCCTCTGACAGACTTCTTCGATGTCAAGAATATCGTGCAGACTA---TAAC 193039 Query 50518 TATTCTAGTGAAAAAGAGGCCCAACAATCGGCGACTCTTTTTGTGGTTCATTTTGCTGTC 50577 ||| || | | ||||| || |||||| | | || ||| | |||||| |||| | || Sbjct 193038 TATATTATCGCAGAAGAGACCTAACAATAGAAGGCTGTTTCTATGGTTCCTTTTAATATC 192979 Query 50578 GATGGCCTTTTATACGTTTCA 50598 ||||| || ||||| ||||| Sbjct 192978 AATGGCGTTCTATACTTTTCA 192958 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 49955 CAGCAGACTGTGTCTACATTTCATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTT 50014 |||| || || || || || || || ||||||||||| ||||| ||||| ||||| || Sbjct 200456 CAGCTAACAGTATCAACGTTCCACCAATGGAACGGTGTTGCCAGCCATGTTGTGCCATTG 200397 Query 50015 ATATTGGCCTTTTTCCTAGGATCCTATAGTGATAGGCGCGGTAGAAAGATTGTACTCGTA 50074 | || || || ||| |||| || ||||| || | || ||| ||||||| | || || Sbjct 200396 CTTTTAGCTTTCTTCATAGGTTCATATAGCGACAAACGAGGTCGAAAGATAATTCTGTTA 200337 Query 50075 TGTGGACTCGTAGGTAAACTCTTTTTCTCGGCAATGCTAACCGTAAA 50121 | || || | || ||| | |||||||| |||||| | ||| |||| Sbjct 200336 GGAGGCCTTCTTGGGAAATTATTTTTCTCAGCAATGATTACCATAAA 200290 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 49955 CAGCAGACTGTGTCTACATTTCATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTT 50014 |||| || || || || || || || ||||||||||| ||||| ||||| ||||| || Sbjct 202712 CAGCTAACAGTATCAACGTTCCACCAATGGAACGGTGTTGCCAGCCATGTTGTGCCATTG 202653 Query 50015 ATATTGGCCTTTTTCCTAGGATCCTATAGTGATAGGCGCGGTAGAAAGATTGTACTCGTA 50074 | || || || ||| |||| || ||||| || | || ||| ||||||| | || || Sbjct 202652 CTTTTAGCTTTCTTCATAGGTTCATATAGCGACAAACGAGGTCGAAAGATAATTCTGTTA 202593 Query 50075 TGTGGACTCGTAGGTAAACTCTTTTTCTCGGCAATGCTAACCGTAAA 50121 | || || | || ||| | |||||||| |||||| | ||| |||| Sbjct 202592 GGAGGCCTTCTTGGGAAATTATTTTTCTCAGCAATGATTACCATAAA 202546 Score = 89.7 bits (98), Expect = 8e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 50602 AGACGAGCGCTCTGTAATGTACATGTATGCAATCAAAGAGTTTAAATGGGACACGACTGC 50661 |||||| || || || ||||| ||||| | || || | || |||||||||||||| | Sbjct 190956 AGACGAACGTTCAGTGATGTATTTGTATACGATAAAGGTATTCAAATGGGACACGACATC 190897 Query 50662 TTATAGCCACTTTAGAACCTACCTGAGTGCAATGTACGTTACGGCGATGCTCTTTGGTAT 50721 || ||| |||| || || || ||||| | ||||| || | || ||||| |||||||| Sbjct 190896 TTTCAGCAACTTCAGGACATATCTGAGCACTATGTATGTCATAGCTATGCTATTTGGTAT 190837 Query 50722 ACCAATCATGAGCCGAATCTTTAAATGGA 50750 |||| | |||| | |||| |||||| Sbjct 190836 ACCACTAATGACTAAAGTCTTGCAATGGA 190808 >seq1422 Length=319902 Score = 105 bits (116), Expect = 1e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 70196 CCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCA 70255 ||| | || || || || |||| || |||||||||| ||||| | | | ||||| Sbjct 30998 CCAGCTGACAGAAGAATGTTAATATGTGCATGGAATCCATCAGATCTAAGCAAGATGGCT 30939 Query 70256 CTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGA--TGGCAAATTGTCATGCT 70313 ||||| || || || || || |||||||| | ||| | |||||| |||| || Sbjct 30938 CTACCGCCATGCCATTGCTTAGCTCAGTTCCAT--GTATCAAGTGGCAAGCTGTCTTGTC 30881 Query 70314 TAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATT 70373 | | ||||| |||||||| || ||||| || ||||| || || |||||||| ||||| | Sbjct 30880 TGCTTTATCAAAGGAGTGCTGATATGGGGCTGGGTGTTCCTTTCAACATTGCCAGCTACT 30821 Query 70374 CTATGTTGACGCACATGATTGCTCACATTACCGG 70407 | | | || ||||||||||| ||||| || || Sbjct 30820 CATTCCTCACTCACATGATTGCCCACATCACAGG 30787 >seq1613 Length=46735 Score = 86.0 bits (94), Expect = 9e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 125784 TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAAC 125843 |||||| | |||||||| ||||| ||||||| ||||| | ||||||||||||||| Sbjct 38995 TACAACACTAAGAATCCGTTTGACTTCATGAATCTTATATCTTTGGAGGGTAAGACCAAC 38936 Query 125844 TTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || |||||||| || ||||||||| Sbjct 38935 TTCTTTGAGAAGAAAGTTAGCGAGTAC 38909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741031641861000