Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq806 167 2e-36 seq1608 118 8e-22 >seq806 Length=81131 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| |||| |||||||||||| || || || ||||| || ||||||||| Sbjct 45872 CCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCGGAA 45931 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | ||||||| | || || |||||| | ||||| | |||||| || |||| Sbjct 45932 AGAGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAAATCAATCTTTGTTGATCTGGTGGA 45991 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| |||||||| ||||||| || ||| |||| || || || ||| || Sbjct 45992 ATTCCCTCTTTGTCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCAGAGGGTTCAACT 46051 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| |||||||||||||| || | |||||| |||||||||||||| Sbjct 46052 TCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 46098 Score = 107 bits (118), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || ||||| |||||||| || |||||||| || ||||| || | | ||| || | | Sbjct 48425 AATACTAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTC--TGATAATGTGCGTCCAT 48482 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| || |||||||| || | ||||| ||||| || || ||| || || || || | Sbjct 48483 CTTCCAACTGTTTGCCGGCAAAGATCAATCGTTGCTGATCAGGTGGGATACCCTCCTTAT 48542 Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 | |||||| || ||| |||| || || || | || || ||||| || |||| Sbjct 48543 CCTGGATTTTGGCTTTAACATTTTCGATTGTGTCAGAAGGCTCAACCTCTAAAGTGATGG 48602 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || |||| |||||||| |||||||||||| Sbjct 48603 TTTTGCCAGTCAATGTTTTTACGAAAATTTGCATA 48637 >seq1608 Length=32450 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| ||||| || || || ||||| || |||||||| || ||| | | | ||| Sbjct 30287 AAAACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGTCCATCT 30228 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||||| ||| | || | ||| || ||||| ||||||||||| ||||| Sbjct 30227 TCAAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCT 30168 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| |||| |||||||| | ||| || |||| ||| |||||| Sbjct 30167 TGGATCTTGGCCTTAACATTTTCGATGGTATCAGAAGGTTCAACTTCTAGGGTGATGGTT 30108 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || |||||||||||| Sbjct 30107 TTTCCAGTGAGGGTCTTCACGAAAATTTGCATA 30075 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| || |||||||| || || || || ||||| || ||| || | | | | ||| Sbjct 30971 AAAACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCGGAAAGGGTACGCCCATCT 30912 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || || |||||| | || | ||| || ||||| ||||||||||| ||||| Sbjct 30911 TCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCC 30852 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| |||| |||||||| ||| || |||||||| |||||| Sbjct 30851 TGGATCTTGGCCTTAACATTTTCAATGGTATCAGATGGTTCAACTTCTAAGGTGATGGTT 30792 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || || || || |||||||||||| Sbjct 30791 TTACCAGTGAGGGTCTTCACGAAAATTTGCATA 30759 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || |||||||| |||||||| || || | | |||||||||| || Sbjct 29594 TGAAGCGTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTGCGACCGTCTTCTAACTGC 29535 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | |||| || || || || ||||| ||||||||||| ||||||| Sbjct 29534 TTTCCAGCGAAGATCAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGAATTTTG 29475 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||||| |||| || || ||| || || || | ||| || |||||||| ||| Sbjct 29474 GCTTTTACATTTTCAATAGTGTCGGATGGCTCAACTTCAAGGGTGATAGTTTTACCCGTC 29415 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | ||||| |||||||| ||||| Sbjct 29414 AAGGTTTTCACAAAAATCTGCAT 29392 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | ||||| ||||| || || || ||||| || |||||||| || Sbjct 31442 CCACCTCGCAGACGCAAAACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGAA 31383 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | | ||||| | |||||||||||| | || | ||| || ||||| ||| Sbjct 31382 AGGGTACGCCCATCTTCAAGCTGTTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGA 31323 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| || ||| ||| ||| |||| |||||||| | || || Sbjct 31322 ATTCCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCGATGGTATCAGAAGGCTCGACT 31263 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| || ||||| || |||| || || || ||||| |||||| Sbjct 31262 TCGAGGGTGATAGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCATA 31215 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | || || || |||||||| || || || || ||||| || ||| Sbjct 30530 CCACCTCGCAGACGCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCGGAA 30471 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | || |||||||| | || | ||| || ||||| ||| Sbjct 30470 AGAGTGCGTCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGA 30411 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| ||||| |||||| |||| ||||||||| | || || Sbjct 30410 ATTCCTTCCTTGTCTTGGATTTTAGCCTTTACGTTTTCAATGGTATCGGAAGGCTCCACT 30351 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| || ||||| || |||| || ||||| ||||| |||||| Sbjct 30350 TCAAGGGTGATAGTTTTTCCAGTCAATGTCTTTACGAAAATCTGCATA 30303 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || ||||| |||||||| || || | | | | ||||| | || Sbjct 29822 TGAAGGGTGGATTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGC 29763 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| || | |||| | ||| ||||| ||| || ||||||||||| |||||| Sbjct 29762 TTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATACCTTCTTTGTCTTGAATTTTT 29703 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || ||||| | || || || | |||||| || ||||| || Sbjct 29702 GCCTTAACATTCTCGATAGTATCTGAAGGCTCGACTTCGAGGGTAATTGTCTTACCAGTA 29643 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || ||||| |||||| Sbjct 29642 AGCGTTTTAACGAAAATCTGCATA 29619 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | ||||| ||||| | || || ||||| || |||||||| || Sbjct 31214 CCACCTCGCAGACGCAAAACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGAA 31155 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | || ||||| ||| | || | ||| || ||||| ||| Sbjct 31154 AGAGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGA 31095 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || ||||| || ||| ||||||| | || || || || | || || Sbjct 31094 ATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCCACT 31035 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || || |||||||| || || || || || |||||||||||| Sbjct 31034 TCAAGAGTGATAGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCATA 30987 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | | || || |||||||| || ||||| || ||||||||||| Sbjct 30758 CCACCTCGCAGACGCAGGACCAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAATCAGAA 30699 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | | ||||| | || |||||||| | || | ||| || ||||| ||| Sbjct 30698 AGGGTACGCCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 30639 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| ||||| || ||| || ||| || ||| | || || || || | || || Sbjct 30638 ATTCCCTCTTTATCTTGAATCTTAGCT-TTCACATTCTCAATAGTGTCAGAAGGCTCCAC 30580 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || ||||||||||| || || || || || ||||| |||||| Sbjct 30579 TTCAAGAGTGATGGTTTTACCAGTGAGGGTCTTCACGAAAATCTGCATA 30531 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || ||||| || |||||||| || ||| | | | ||||| Sbjct 31652 ACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCC 31593 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||||||| | || | ||| || ||||| ||||||||||| ||||| Sbjct 31592 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGG 31533 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || |||| |||||||| || || || | ||| || ||||| Sbjct 31532 ATTTTAGCCTTAACGTTTTCGATGGTATCAGATGGCTCGACTTCGAGGGTGATAGTTTTT 31473 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || || ||||| |||||| Sbjct 31472 CCAGTCAAGGTCTTCACGAAAATCTGCATA 31443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362166068174475