Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq2898 232 6e-56 seq2295 178 1e-39 seq806 111 1e-19 seq2205 87.8 1e-12 >seq2898 Length=111689 Score = 232 bits (256), Expect = 6e-56 Identities = 643/974 (66%), Gaps = 18/974 (2%) Strand=Plus/Plus Query 100412 ACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCCACG 100471 || || |||||||| ||||||||||| || || || || | |||||| ||| || Sbjct 27512 ACTCCAGTCCAACCACGGCCGTACATAGCTACACCAACGACAATTTTCTTAGGGCTGACT 27571 Query 100472 CCCTGGTTCGTGAGCAATTTCACGGCGTGATCCGTGTTGTACAGCTCGTTCGGGTTCCAA 100531 ||||| | || ||||| || || || || |||| ||| || |||||||| Sbjct 27572 CCCTGAGCCAACAGGAATTTGACACCGAAGTCAGTTGTGTAAGTCTCCTTGGGGTTCCAG 27631 Query 100532 CTCGGCGCGTAGAGAGTGGTTTGGTAGCCCAAATCGGTGTTTGACCAGGCGCCTTTAAAA 100591 || |||| || | | ||||| ||| | | | ||||||||| || || || || Sbjct 27632 GCGGGAGCGTGCAGGGCAGCTTGGTGGCCAAGAGTGTCGTTTGACCAAGCTCCCTTGAAG 27691 Query 100592 TCGTAGCTCATAAGAAATATTTTATCGAGAAGCTTTTGCGCAACGTCGTACTGTACCACA 100651 ||||||||||| | || || | || | || || || | | ||| | ||| || Sbjct 27692 TCGTAGCTCATCAAGAAGATGTGGTCCATGTACTGCTGAGCCGCTTTGTAGTCTACTACC 27751 Query 100652 GCAATTTTGTCATAGCCGGAACTGATTGCGCTTGTCAACTCGTACGTTTTGCCCGTTT-- 100709 ||| ||||| | || || ||||| || |||| ||||| | || || || | Sbjct 27752 TGAATCTTGTCCCAACCAGAGCTGATGGCTGAAGTCAGTTCGTATTTCTTTCCAGTCTTG 27811 Query 100710 GCAGTTGTAGCTGGTCCAGCATCGCGCGCAATTCCTTCAGTAAAATGTTGTACGTGTCGG 100769 |||| |||| || |||||| | | || |||||||| | | ||| ||| Sbjct 27812 GCAGAC--AGCTCGTTAAGCATCTCTCTCAGTTCCTTCATCAGCTCGACGTAGATGTGAC 27869 Query 100770 CGTCGCGCTCCCCGTTGCCAAGAGTCGGGTTGGCGCCTTTGCCGCCCGGAAACTCCCAGT 100829 |||| || | | || ||| ||||| ||||| || || || || |||||||||| Sbjct 27870 CGTCA---TCAGGGCTACCGAGATCAGGGTTAGCGCCCTTACCACCAGGGAACTCCCAGT 27926 Query 100830 CAATGTCCACGCCGTCAAAAAACTTCCACACCTGCAAAAATTCCTTGACCGAGTCCACAA 100889 |||||||||| || ||||| || ||||| | | || ||||| || ||||| || | Sbjct 27927 CAATGTCCACTCCATCAAAGAATTTCCAGGTTTCAAGGAAGTCCTTCACAGAGTCAACGA 27986 Query 100890 ACACGC-GCCGTTTTTCCGCATC-GTGCATGAAATAGAACGGGTCGGACAACGTCCAGCC 100947 | ||| || || || || ||| | ||| |||| || || | || ||||| || Sbjct 27987 A-GCGCTTCCTCTTAACCTTGTCAGTG-AAGAAGAAGAATGGATCAGCCAGGGTCCAACC 28044 Query 100948 GCCGATGGACGGCAGAATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACC 101007 || | ||| || | || || |||| || | ||| | || | ||| ||||| || Sbjct 28045 ACCAACGGAAGGTAAGATCTTCAGGTCAGGTCTTGCCTGTTTCAACATCATCAGCTGTCC 28104 Query 101008 GAAATTGCCCTTGTACGGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGC 101067 |||||| |||||||| || |||||||| | | || |||||||| ||||| || | || Sbjct 28105 GAAATTACCCTTGTAGGGTTCGTTCCAGGACGCCAGACCCTTTTGTGGTTTCTGAAGAGC 28164 Query 101068 GGCCCAGGGATCGTGAATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAG 101127 ||||| || |||||||| | |||||||| || | || ||||||| || ||||| Sbjct 28165 TGCCCAAGGGTCGTGAATCGATACTTTGAAGTCCTCCCTGCCACTGCAGGATCGTTGCAG 28224 Query 101128 CGCTTCAAAACTGCCGGGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAAT 101187 |||| || ||||| || ||| | |||||||| ||| || || ||||| || Sbjct 28225 AGCTTGGAAGCTGCCTTCGATTTCTTTCAAACTGTCGTTGATGCCATCTCCACCGCAGAT 28284 Query 101188 GGGTATGAACCCGTACAACAGATGCGAGAGATTGGGCAGCGGCACTTTGTCTACCGGAAA 101247 || ||||| ||||||| ||||| | ||||| || | || || ||| || || || Sbjct 28285 TGGGATGAAACCGTACAGAAGATGGGTAAGATTCGGGATGGGTACGCGGTCGACGGGGAA 28344 Query 101248 ATTGCGGCCGTACACGCCCCACTCTACAAAATACGCAGCGACGGTCTTGTCCTGGCGCCG 101307 || | | ||| |||||||| || || || || || | || |||| || | | | Sbjct 28345 CTTCCTGGGGTAGACGCCCCATTCGACGAAGTAAGCGCCAACAACCTTG-CCAGAAGTCT 28403 Query 101308 TC----CGGGCTTGTTGTTCTC-CCGCCAAACGTATTCCAGCGGAGACAAATGACCACCG 101362 | ||||||||| |||| ||| | | ||| |||| || | ||| || | |||| Sbjct 28404 GCTTGAAGGGCTTGTTCCTCTCTCCGATAGA-GTAGTCCAAGGGTGGCAAGTGGCTACCG 28462 Query 101363 TCCGTGTCCGCAAC 101376 || || || ||||| Sbjct 28463 TCAGTATCGGCAAC 28476 >seq2295 Length=223346 Score = 178 bits (196), Expect = 1e-39 Identities = 188/248 (76%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 24864 TCGGTCACGACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTATGCGCAGCGC 24923 |||| || ||||| ||||| || ||||||||||| || || | ||||| |||||||| Sbjct 102153 TCGGACATCACCTTCTGTACGTACTCGCGGCCCTTCACCAGCTGCACGTAGGCGCAGCGA 102094 Query 24924 CCGAACCAAAGCGCGTGTTGTTGCCACGGCTCGTCATCTTGCTCCCAGTTGTCCAAACCG 24983 ||||||| ||||||| |||| ||| ||| ||||||| | ||||||| | ||||||| Sbjct 102093 TCGAACCAGCGCGCGTGCTGTTCCCAGGGCACGTCATCATTTTCCCAGTCTTTCAAACCG 102034 Query 24984 CCGTCGCAGTAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAGAAGCCAGCTTCT 25043 || ||||| || ||||| ||| || || | | |||||||| ||||| ||||| || Sbjct 102033 CCATCGCAATAGAAACACTTGGTCTTATCCCCCTGACCGGTGTAGAAGAAACCAGCCTCG 101974 Query 25044 GCAAGTTTTTCGGGCCGTTGCTTCAAACCGCGTGGCCACTCTGTAAATGTGCGCAAACGC 25103 ||||||| || || |||| || | || ||||| ||| |||| ||||||||||| Sbjct 101973 GCAAGTTCCTCTGGTTTTTGCCGCATGCATCGCGGCCAGTCTTTAAAACTGCGCAAACGC 101914 Query 25104 GCAGCTTC 25111 |||||||| Sbjct 101913 GCAGCTTC 101906 >seq806 Length=81131 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| |||||||| || | || | || || |||||||||||||||||||| | Sbjct 45870 TTCCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCGG 45929 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | || |||| || ||||| ||||| || |||| | ||| || ||||| | Sbjct 45930 AAAGAGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAAATCAATCTTTGTTGATCTGGTG 45989 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||||||||| |||||| ||| || | | | || || || || Sbjct 45990 GAATTCCCTCTTTGTCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCAGAGGGTTCAA 46049 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | |||||||||||||| ||||||||||| |||||||||||||| Sbjct 46050 CTTCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 46098 >seq2205 Length=656796 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 || ||||||| || ||| | ||| | ||| | || || ||||| || || ||||| || Sbjct 548978 TTACCTCCTCTCAGCCTAAGCACTAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCT 548919 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 | | ||| | | || |||| ||||||||| || | ||||| | ||||| || Sbjct 548918 GAGAGTGTGCGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGC 548859 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991 || | |||||||||||| ||| || || || | | | ||| || || |||| Sbjct 548858 GGGATGCCCTCTTTGTCCTGAATCTTTGCCTTCACATTCTCAATAGTGTCCGAAGCCTCC 548799 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATCTC 19051 |||| ||| ||||| ||||| || | ||||| || || ||||||||| || | || Sbjct 548798 ACCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATTTGCATTGTAGAGCTG 548739 Query 19052 TTATAA 19057 | |||| Sbjct 548738 TAATAA 548733 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 || ||||||| || ||| | ||||| ||| | || || |||||||| || || || || Sbjct 546108 TTACCTCCTCTCAGCCTGAGCACCAAGTGAAGAGTGGATTCCTTTTGGATGTTATAGTCT 546167 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 | | || | | || |||| ||||||||| || | ||||| | ||||| || Sbjct 546168 GAAAGAGTGCGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGC 546227 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991 || | |||||||||||| ||||| ||||| | | | ||| || || |||| Sbjct 546228 GGAATGCCCTCTTTGTCCTGGATTTTTGCCTTTACATTCTCAATAGTGTCTGAAGCCTCC 546287 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTA 19045 |||| ||| ||||| ||||| || | ||||| || || || |||||| || Sbjct 546288 ACCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATCTGCATTGTA 546341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414557768497150