Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1608 95.1 8e-15 seq806 91.5 9e-14 >seq1608 Length=32450 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || || |||||||| || ||||| ||||||| || | ||| || || ||||||||| Sbjct 29588 GTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTGCGACCGTCTTCTAACTGCTTTCCA 29529 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 || || | || ||||| || | ||| ||||||||||| || ||| |||| Sbjct 29528 GCGAAGATCAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTT 29469 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || ||| ||| |||||| || | ||| || || || || ||||| ||||| | ||| Sbjct 29468 ACATTTTCAATAGTGTCGGATGGCTCAACTTCAAGGGTGATAGTTTTACCCGTCAAGGTT 29409 Query 33353 TTTACGAAAATTTGCAT 33369 || || ||||| ||||| Sbjct 29408 TTCACAAAAATCTGCAT 29392 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||||||||| ||||||||||| || || ||||| ||||| | | || || Sbjct 30290 CGCAAAACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGTCCA 30231 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || || | || || || || || | ||| |||||||| | ||| || ||||| || Sbjct 30230 TCTTCAAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCCTTG 30171 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || ||| || || || |||| ||| || || || Sbjct 30170 TCTTGGATCTTGGCC---TTAACATTTTCGATGGTATCAGAAGGTTCAACTTCTAGGGTG 30114 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| || || || || |||||||||||||| Sbjct 30113 ATGGTTTTTCCAGTGAGGGTCTTCACGAAAATTTGCAT 30076 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | ||||| ||||||||||| || |||||||| || || ||||| ||||| Sbjct 31215 ACCACCTCGCAGACGCAAAACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGA 31156 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || | || |||| ||||| || || || | ||| |||||||| | ||| Sbjct 31155 AAGAGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGG 31096 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || || || || || | | | ||| ||||| | | ||| ||||| || | Sbjct 31095 AATTCCCTCCTTGTCCTGGATCTTGGCC---TTTACATTCTCAATAGTGTCAGAAGGCTC 31039 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || ||||| || || || || || |||||||||||||| Sbjct 31038 CACTTCAAGAGTGATAGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 30988 >seq806 Length=81131 Score = 91.5 bits (100), Expect = 9e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| |||| | || ||||| | ||| || || ||||| ||||||||||| || Sbjct 45872 CCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCGGAA 45931 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | || || ||| || | ||||| ||| || || || | ||| || || | || Sbjct 45932 AGAGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAAATCAATCTTTGTTGATCTGGTGGA 45991 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || ||||| || ||| ||| || ||| ||| ||||| ||||| ||| Sbjct 45992 ATTCCCTCTTTGTCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCAGAGGGTTCAACT 46051 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || | || || ||||| || || | |||||| || |||||||||||| Sbjct 46052 TCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCATG 46099 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || || || || || ||||||||||||||||| | | || ||| Sbjct 47972 ACCAAGTGAAGAGTGGATTCCTTCTGAATATTGTAATCAGACAAGGTTCGCCCATCCTCC 48031 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||| || || || || || || ||||| | ||| || ||||| || || | Sbjct 48032 AATTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGAATACCTTCCTTGTCCTGA 48091 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || ||| || ||| ||| ||||| ||||| ||| || || || || || || Sbjct 48092 ATTTTAGCTTTGACATTTTCAATTGTGTCAGAGGGTTCAACTTCTAGTGTGATAGTCTTG 48151 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | |||||| ||||| |||||||| Sbjct 48152 CCAGTCAAAGTTTTGACGAAGATTTGCAT 48180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318766041821550