Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq806 105 5e-18 seq2205 82.4 5e-11 >seq806 Length=81131 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTC 43971 ||||| || || || ||| || || ||||||||||| | | || || |||| || Sbjct 48200 ACCAAGTGGAGAGTTGACTCCTTCTGGATATTATAATCAGAAAGAGTGCGGC-CATCCTC 48258 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 || ||||| ||||| || |||| || |||||||| | || | |||||| ||||| Sbjct 48259 TAACTGTTTGCCTGCGAAGATCAGTCGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTG 48318 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||| |||||| | ||| || || | |||||| || || | || |||||||| Sbjct 48319 TATTTTGGCTTTGACATTTTCAATTGTGTCAGACGGCTCAACTTCTAAAGTTATTGTTTT 48378 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| |||||||| || || ||||||||||| Sbjct 48379 ACCAGTTAAAGTTTTTACGAATATTTGCAT 48408 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | | | ||| | ||| || || ||| || || ||||| || ||| Sbjct 48637 ACCACCTCTGAGACGCAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGA 48696 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | || || |||| |||||||||||||| || || ||||| | || || || ||| Sbjct 48697 AAGAGTG-CGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAG 48755 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| |||||| ||||||| ||| || | ||| ||||| | || |||| Sbjct 48756 GAATGCCTTCCTTATCTTGAATTTTTGCTTTAACGTTTTCAATGGTATCAGAGGGTTCCA 48815 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGT 44123 | || | || || ||||| || || |||||||||||||| || ||||||| Sbjct 48816 CCTCTAATGTTATGGTTTTCCCCGTCAAAGTCTTCACAAAGATCTGCATGT 48866 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||| |||| || ||||| || || || ||||||||||| |||||| Sbjct 45872 CCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCGGAA 45931 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || || | || || | || || || || || ||||| | ||| || || | || Sbjct 45932 AGAGTG-CGTCCGTCTTCAAGCTGCTTACCAGCGAAAATCAATCTTTGTTGATCTGGTGG 45990 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| ||| |||||| |||||| | ||| || || | || || || Sbjct 45991 AATTCCCTCTTTGTCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCAGAGGGTTCAAC 46050 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCG 44125 || | ||||| |||||||| |||||||| |||||||| ||||||||| || Sbjct 46051 TTCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCATGCCG 46102 >seq2205 Length=656796 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||| || | |||||| || || ||| || ||||| || ||||| || Sbjct 546110 ACCTCCTCTCAGCCTGAGCACCAAGTGAAGAGTGGATTCCTTTTGGATGTTATAGTCTGA 546169 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | || || |||| ||||| ||||| || || || || | ||||||||||| | | Sbjct 546170 AAGAGTGCGGC-CATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCG 546228 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | || ||||| || |||||| || || | ||| ||| |||| | ||||| Sbjct 546229 GAATGCCCTCTTTGTCCTGGATTTTTGCCTTTACATTCTCAATAGTGTCTGAAGCCTCCA 546288 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | |||| || || || ||||| || | || || || || || ||||| Sbjct 546289 CCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATCTGCAT 546337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354764736540300