Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq2898 197 1e-45 seq2295 131 1e-25 seq1608 89.7 4e-13 seq806 89.7 4e-13 >seq2898 Length=111689 Score = 197 bits (218), Expect = 1e-45 Identities = 572/875 (65%), Gaps = 9/875 (1%) Strand=Plus/Plus Query 101102 ACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCTACG 101161 || || |||||||| ||||||||||| || || || || | |||||| ||| || Sbjct 27512 ACTCCAGTCCAACCACGGCCGTACATAGCTACACCAACGACAATTTTCTTAGGGCTGACT 27571 Query 101162 CCCTGGTTCGTGAGCGATTTAACAGCGTAATCCGTGTTGTACAGCTCGTTTGGGTTCCAA 101221 ||||| | || |||| ||| || | || || |||| ||| || |||||||| Sbjct 27572 CCCTGAGCCAACAGGAATTTGACACCGAAGTCAGTTGTGTAAGTCTCCTTGGGGTTCCAG 27631 Query 101222 CTCGGCGCGTAGAGTGTAGTTTGATAGCCCAGATCGATGTTTGACCACGCGCCTTTGAAA 101281 || |||| || | || ||| | ||| ||| | ||||||||| || || ||||| Sbjct 27632 GCGGGAGCGTGCAGGGCAGCTTGGTGGCCAAGAGTGTCGTTTGACCAAGCTCCCTTGAAG 27691 Query 101282 TCGTAGCTCATGAGAAATATTTTATCGAGGAACTTTTGCGCAAGATCGTATTTTACTACA 101341 ||||||||||| | || || | || | | ||| || || | ||| | |||||| Sbjct 27692 TCGTAGCTCATCAAGAAGATGTGGTCCATGTACTGCTGAGCCGCTTTGTAGTCTACTACC 27751 Query 101342 GCAATTTTGTCGTGACCCGAACTAATTGCACTTGTTAATTCGTATGTTTTGCCCGTTT-- 101399 ||| ||||| ||| || || || || || | ||||||| | || || || | Sbjct 27752 TGAATCTTGTCCCAACCAGAGCTGATGGCTGAAGTCAGTTCGTATTTCTTTCCAGTCTTG 27811 Query 101400 GCAGTTGCAACTCGTCCAGCATTGCGCGCAATTCTTTCAGTAAAATGTTGTACGTGTCAG 101459 |||| || ||||| ||||| | | || ||| |||| | | ||| ||| | Sbjct 27812 GCAGA--CAGCTCGTTAAGCATCTCTCTCAGTTCCTTCATCAGCTCGACGTAGATGTGAC 27869 Query 101460 CGTCGCGTTCTTTGTTGCCGAGTGTTGGGTTGGCGCCTTTACCACCCGGAAACTCCCAAT 101519 |||| || | | ||||| ||||| ||||| |||||||| || |||||||| | Sbjct 27870 CGTCA---TCAGGGCTACCGAGATCAGGGTTAGCGCCCTTACCACCAGGGAACTCCCAGT 27926 Query 101520 CGATGTCTACCCCGTCAAAAAATTTCCAAACCTGCAAAAATTCTTTGACAGAATCCACAA 101579 | ||||| || || ||||| |||||||| | | || || || ||||| || || | Sbjct 27927 CAATGTCCACTCCATCAAAGAATTTCCAGGTTTCAAGGAAGTCCTTCACAGAGTCAACGA 27986 Query 101580 ACACACGCCGTTTTATCGCGTC-GTGCATATAATAGAACGGGTCGGACAATGTCCAGCCG 101638 | || || | | ||| ||| | | | |||| || || | || ||||| || Sbjct 27987 AGCGCTTCCTCTTAACCTTGTCAGTGAAGAAGA-AGAATGGATCAGCCAGGGTCCAACCA 28045 Query 101639 CCGATGGACGGCAAAATTTTAAGGTGTGGATTGGCCAATTTGGCCGCCATTAGCTGACCA 101698 || | ||| || || || || |||| || | ||| ||| | ||| ||||| || Sbjct 28046 CCAACGGAAGGTAAGATCTTCAGGTCAGGTCTTGCCTGTTTCAACATCATCAGCTGTCCG 28105 Query 101699 AAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGATACACCTTTCTGCGGTTTTTGTATTGCG 101758 || || || |||||||| |||||||| | | | ||| || || ||||| || | || Sbjct 28106 AAATTACCCTTGTAGGGTTCGTTCCAGGACGCCAGACCCTTTTGTGGTTTCTGAAGAGCT 28165 Query 101759 GCCCAAGGATCGTGGATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAACGTTGCAAC 101818 |||||||| ||||| || | ||||| || || | ||| ||| || ||||||| Sbjct 28166 GCCCAAGGGTCGTGAATCGATACTTTGAAGTCCTCCCTGCCACTGCAGGATCGTTGCAGA 28225 Query 101819 GCTTCAAAACTACCGGGTATGGTTTTGAGGGCGTCGTTAAGGCCATCGCCGCCACAAATG 101878 |||| || || || || ||| | |||||| | |||||| || || || || Sbjct 28226 GCTTGGAAGCTGCCTTCGATTTCTTTCAAACTGTCGTTGATGCCATCTCCACCGCAGATT 28285 Query 101879 GGTATGAACCCGTACAACAAATGTGAGAGGTTGGGCAGCGGCACTTTGTCCACCGGAAAG 101938 || ||||| ||||||| | ||| | || || || | || || ||| || || || Sbjct 28286 GGGATGAAACCGTACAGAAGATGGGTAAGATTCGGGATGGGTACGCGGTCGACGGGGAAC 28345 Query 101939 TTGCGACCATACACGCCCCATTCTACAAAATACGC 101973 || | || ||||||||||| || || || || Sbjct 28346 TTCCTGGGGTAGACGCCCCATTCGACGAAGTAAGC 28380 >seq2295 Length=223346 Score = 131 bits (144), Expect = 1e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 23538 TGCACGTAGTCGTAGCCCTTTACGAGCCGCACGTATGTGCAGCGATCAAACCAACGTGCG 23597 || ||||| ||| |||||| || ||| ||||||| | ||||||||| ||||| || ||| Sbjct 102138 TGTACGTACTCGCGGCCCTTCACCAGCTGCACGTAGGCGCAGCGATCGAACCAGCGCGCG 102079 Query 23598 TGTTCTTCCCACGGCTCGTCGGTGCTTTCCCAGTCTTTGAGGCCGCCGTCGCAATGAAAA 23657 || | |||||| ||| |||| ||||||||||||| | ||||| ||||||| ||| Sbjct 102078 TGCTGTTCCCAGGGCACGTCATCATTTTCCCAGTCTTTCAAACCGCCATCGCAATAGAAA 102019 Query 23658 CATTTGACCCTGTCACCCTTGCCGGTGTAATAAAAACCGGCTTCAGCTAATTGCTCTGGC 23717 || ||| | | || |||| |||||||| | ||||| || || || | || |||||| Sbjct 102018 CACTTGGTCTTATCCCCCTGACCGGTGTAGAAGAAACCAGCCTCGGCAAGTTCCTCTGGT 101959 Query 23718 TTTTG 23722 ||||| Sbjct 101958 TTTTG 101954 >seq1608 Length=32450 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || |||||||||||||| |||||||| || || || | ||||| || || Sbjct 29594 TGAAGCGTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTGCGACCGTCTTCTAACTGC 29535 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || || | || || | ||| ||||| ||| | |||||||||||| |||||| Sbjct 29534 TTTCCAGCGAAGATCAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGAATTTTG 29475 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 ||| || | ||| || ||| || || ||| | ||| || ||||| || ||| Sbjct 29474 GCTTTTACATTTTCAATAGTGTCGGATGGCTCAACTTCAAGGGTGATAGTTTTACCCGTC 29415 Query 20186 AACGTTTTGACAAAAATTTGCATT 20209 || ||||| |||||||| |||||| Sbjct 29414 AAGGTTTTCACAAAAATCTGCATT 29391 >seq806 Length=81131 Score = 89.7 bits (98), Expect = 4e-13 Identities = 168/246 (68%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 19963 AAATATATTTTATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTT 20022 |||| |||||| | | |||| |||| ||||| | || ||||| ||||| ||||| || Sbjct 45854 AAATCTATTTTTT-ACATTCCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTT 45912 Query 20023 TTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAG 20082 ||| || ||||||||| | ||| ||||| | || || || || |||| | Sbjct 45913 TTGAATATTGTAATCGGAAAGAGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAAATCAA 45972 Query 20083 CCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAAC 20142 || |||||||| || | || |||||||| |||||| ||| || | ||| Sbjct 45973 TCTTTGTTGATCTGGTGGAATTCCCTCTTTGTCTTGAATTTTGGCTTTGACATTTTCAAT 46032 Query 20143 AGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAAT 20202 | || ||||| ||| | ||||||||||| || || || ||||| |||||||| Sbjct 46033 TGTGTCAGAGGGTTCAACTTCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAAT 46092 Query 20203 TTGCAT 20208 |||||| Sbjct 46093 TTGCAT 46098 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 || ||| | ||| || ||||| || || || || ||||| ||| | ||| ||| Sbjct 48652 CAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGTCCATC 48711 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||||||||| || || | || | |||||||||||| || | |||||| || || Sbjct 48712 TTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGGAATGCCTTCCTTATC 48771 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||||||| ||| || | ||| | ||| |||||| || | || ||||| Sbjct 48772 TTGAATTTTTGCTTTAACGTTTTCAATGGTATCAGAGGGTTCCACCTCTAATGTTATGGT 48831 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 ||| || ||||| || || ||||| || ||||| || Sbjct 48832 TTTCCCCGTCAAAGTCTTCACAAAGATCTGCATGTT 48867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419571986685975