Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq806 167 5e-36 seq1608 156 1e-32 seq2205 136 9e-27 >seq806 Length=81131 Score = 167 bits (184), Expect = 5e-36 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | ||||| || ||||| ||||| ||||| Sbjct 48635 ATACCACCTCTGAGACGCAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCG 48694 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| | ||||||||| || || || | ||||||||||| ||| Sbjct 48695 GAAAGAGTGCGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGA 48754 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| ||||| |||||||| || ||||| | |||||| ||||| Sbjct 48755 GGAATGCCTTCCTTATCTTGAATTTTTGCTTTAACGTTTTCAATGGTATCAGAGGGTTCC 48814 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 ||||||| ||| || || || || || | || || ||||| |||||||| |||| Sbjct 48815 ACCTCTAATGTTATGGTTTTCCCCGTCAAAGTCTTCACAAAGATCTGCATGTTGT 48869 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | |||||| | || | || ||||| ||||||||||| || ||| Sbjct 47951 ATACCACCACGTAGACGAAGTACCAAGTGAAGAGTGGATTCCTTCTGAATATTGTAATCA 48010 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||| || || || | ||| || || || || || | | |||||| || || Sbjct 48011 GACAAGGTTCGCCCATCCTCCAATTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGG 48070 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || |||||||| || ||||| |||||||| | || || ||||| Sbjct 48071 GGAATACCTTCCTTGTCCTGAATTTTAGCTTTGACATTTTCAATTGTGTCAGAGGGTTCA 48130 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||||||| |||||||| ||||| | ||||| || || || ||||| Sbjct 48131 ACTTCTAGTGTGATAGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 48180 Score = 127 bits (140), Expect = 5e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || |||| ||| || |||||||| ||||||||||| || ||| Sbjct 46097 ATGCCGCCTCTAAGACGGAGGACTAAATGCAACGTAGATTCCTTCTGAATATTGTAATCA 46156 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||| || || || | ||| || || || || || | |||||||| || ||| Sbjct 46157 GACAATGTTCGTCCATCCTCCAATTGCTTGCCGGCGAAGATCAATCTCTGTTGGTCTGGA 46216 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || |||||||| || || || |||||||| | || || || || Sbjct 46217 GGAATACCTTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATTGTGTCAGATGGCTCA 46276 Query 104510 ACCTCTAGTGTAATAGTCTT 104529 || |||||||| |||||||| Sbjct 46277 ACTTCTAGTGTGATAGTCTT 46296 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| || | ||||||||||| || ||||| ||||| |||| || | || ||||| Sbjct 48427 TACTAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGATAATGTGCGTCCATCTTC 48486 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | ||||| || ||||| || | | || |||||||| || || || || |||||||| Sbjct 48487 CAACTGTTTGCCGGCAAAGATCAATCGTTGCTGATCAGGTGGGATACCCTCCTTATCCTG 48546 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 || || ||||| |||||||| | || || ||| || ||||||| || || || || Sbjct 48547 GATTTTGGCTTTAACATTTTCGATTGTGTCAGAAGGCTCAACCTCTAAAGTGATGGTTTT 48606 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||||||||| || || ||||| Sbjct 48607 GCCAGTCAATGTTTTTACGAAAATTTGCAT 48636 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 || || |||||||| || || ||||| |||||||| | || || ||| || ||||| Sbjct 47849 CCCTCCTTATCCTGGATTTTGGCTTTAACATTTTCGATCGTGTCAGAAGGCTCGACCTCA 47908 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||||||||| ||||||||||| || || ||||| Sbjct 47909 AGGGTGATGGTCTTACCAGTTAGTGTTTTTACGAAGATTTGCAT 47952 >seq1608 Length=32450 Score = 156 bits (172), Expect = 1e-32 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| || || || |||||||| || || | ||||||||||| || |||||| Sbjct 29588 GTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTGCGACCGTCTTCTAACTGCTTTCCA 29529 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || || |||||||| || ||||| || |||||| Sbjct 29528 GCGAAGATCAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTT 29469 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || ||| || || || || || || ||||| ||||| || | ||| Sbjct 29468 ACATTTTCAATAGTGTCGGATGGCTCAACTTCAAGGGTGATAGTTTTACCCGTCAAGGTT 29409 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| ||||||||| || Sbjct 29408 TTCACAAAAATCTGCATTATG 29388 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || || || | || ||||| || ||||| || |||||| Sbjct 29849 ATACCACCTCGCAGACGCAGGACCAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCA 29790 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || ||||| || ||||| || || || || Sbjct 29789 GAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGT 29730 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || ||||| ||||| || ||||| || | ||||| ||| || Sbjct 29729 GGGATACCTTCTTTGTCTTGAATTTTTGCCTTAACATTCTCGATAGTATCTGAAGGCTCG 29670 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| |||||||||||||| ||||| || || |||||||| Sbjct 29669 ACTTCGAGGGTAATTGTCTTACCAGTAAGCGTTTTAACGAAAATCTGCAT 29620 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || |||||||| ||||| | || ||||| || ||||| || Sbjct 30272 GTCGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCAAGCTGTTTGCCG 30213 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || |||||||| || || || ||||| || || Sbjct 30212 GCGAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTA 30153 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | |||||| |||||| || ||||| || || || || ||||| || || Sbjct 30152 ACATTTTCGATGGTATCAGAAGGTTCAACTTCTAGGGTGATGGTTTTTCCAGTGAGGGTC 30093 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 30092 TTCACGAAAATTTGCAT 30076 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||||||||| || || || ||||| || || | || ||||| || || || ||| Sbjct 30728 GTAGATTCTTTCTGGATGTTGTAATCAGAAAGGGTACGCCCATCTTCAAGCTGCTTGCCA 30669 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || ||||| |||||||| |||||||| ||||| Sbjct 30668 GCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCCTCTTTATCTTGAATCTTAGCTTTC 30609 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || ||| || || || || || || || |||||||| || || Sbjct 30608 ACATTCTCAATAGTGTCAGAAGGCTCCACTTCAAGAGTGATGGTTTTACCAGTGAGGGTC 30549 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 30548 TTCACGAAAATCTGCAT 30532 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| || ||||| ||||||||||| || |||||||| ||||| | ||| ||||| || || Sbjct 31191 ATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTG 31132 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 || || || || || || | ||| || || || || ||||| || || ||||| ||||| Sbjct 31131 CTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTT 31072 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || |||||||| || | || || ||| || || || || || ||||| |||||||| Sbjct 31071 GGCCTTTACATTCTCAATAGTGTCAGAAGGCTCCACTTCAAGAGTGATAGTTTTACCAGT 31012 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| Sbjct 31011 GAGGGTCTTCACGAAAATTTGCAT 30988 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || |||||||| || || | || ||||| || ||||| ||| Sbjct 31412 GTCGACTCTTTCTGAATGTTGTAGTCAGAAAGGGTACGCCCATCTTCAAGCTGTTTGCCA 31353 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || |||||||| || || || ||||| || || Sbjct 31352 GCGAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTA 31293 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | |||||| ||| || || || || || ||||| || ||||| | || Sbjct 31292 ACATTTTCGATGGTATCAGAAGGCTCGACTTCGAGGGTGATAGTTTTTCCAGTCAAGGTC 31233 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 31232 TTCACGAAAATCTGCAT 31216 >seq2205 Length=656796 Score = 136 bits (150), Expect = 9e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| |||||||| |||| || | ||| ||||| ||||| || || ||||| || Sbjct 548975 CCTCCTCTCAGCCTAAGCACTAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGAG 548916 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || || | || ||||| | ||||| || || || || || | || || || || || Sbjct 548915 AGTGTGCGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGGG 548856 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || ||||| |||||||||||||| || ||||| || | || || || || ||| Sbjct 548855 ATGCCCTCTTTGTCCTGAATCTTTGCCTTCACATTCTCAATAGTGTCCGAAGCCTCCACC 548796 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || |||||||| || || |||||||| || || |||||| Sbjct 548795 TCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATTTGCATT 548748 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| ||| | |||| ||||| | || ||||| ||||| |||||||| || |||| | Sbjct 562514 TTCCTCCTGTCTGCCTGAGTACCAAGTGGAATGTGGATTCCTTCTGAATGTTGTAGTTTG 562455 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 ||||| | || ||||| | ||||| || || || || || | || || || || | Sbjct 562454 TGAGAGTGCGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCG 562395 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | || | ||||| |||||||||||||| || ||||| || | || || || || | Sbjct 562394 GGATGCTCTCTTTGTCCTGAATCTTTGCCTTCACATTCTCAATAGTGTCTGAAGCCTCCA 562335 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 | || || | ||||||||||| || || |||||||| || || |||||| Sbjct 562334 CTTCGAGGGCGATAGTCTTACCCGTCAGGGTTTTTACGAAGATTTGCATT 562285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151354511931300