Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2898 183 3e-41 >seq2898 Length=111689 Score = 183 bits (202), Expect = 3e-41 Identities = 550/833 (66%), Gaps = 37/833 (4%) Strand=Plus/Minus Query 30127 ATTGTTGTAGCCGACACGGACGGTTCCCACTTGGAACCCATCGAATACGTGTGGCGG-GA 30185 || || || ||||| || |||||| ||||||| |||| | || ||| | | ||| || Sbjct 28482 ATAGTGGTTGCCGATACTGACGGTAGCCACTTGCCACCCTTGGACTAC-TCTATCGGAGA 28424 Query 30186 CAACAACAAACCATACACT-AGAGCGACGGATCATGTGGTGGCCGGTTACTTTGTAGAGT 30244 | ||||| || | || ||| | | | | || || | || |||||| || || | Sbjct 28423 GAGGAACAAGCCCTTCAAGCAGA-CTTCTGGCAAGGTTGTTGGCGCTTACTTCGTCGAAT 28365 Query 30245 GGGGTGTTTACGACAGACAATATCCAGCAGACTTAGTTCCCGTCCCCAACCTTACGCATC 30304 |||| || ||| ||| | | || | ||| || ||| |||| || ||||| |||| Sbjct 28364 GGGGCGTCTACCCCAGGAAGTTCCCCGTCGACCGCGTACCCATCCCGAATCTTACCCATC 28305 Query 30305 TTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGATAGCTT-AAAGCAA 30363 || |||| || || | || |||||||||||||||| || ||||| || || |||| || Sbjct 28304 TTCTGTACGGTTTCATCCCAATCTGCGGTGGAGATGGCATCAACGACAGTTTGAAAGAAA 28245 Query 30364 GTGCCGGGTTCGTTTGAGGCTTTACAAAAATCTTGCGCGGGTCGAGAGGATTTTAAAGTG 30423 | || | || | ||| | ||| ||| ||| || | ||||| || ||||| Sbjct 28244 TCGAAGGCAGC-TTCCAAGCTCTGCAACGATCCTGCAGTGGCAGGGAGGACTTCAAAGTA 28186 Query 30424 ACGATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGGAGTGGGCGCTTGGGAC 30483 |||||||||| ||||| |||||||| ||||||||||| || ||| | ||| || Sbjct 28185 TCGATTCACGACCCTTGGGCAGCTCTTCAGAAACCACAAAAGGGTCTGGCGTCCTGGAAC 28126 Query 30484 GATCCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAAA-AGACACAATCCCGACCT 30542 || || || || || ||||| || || |||||| | | ||| || || | || ||||| Sbjct 28125 GAACCCTACAAGGGTAATTTCGGACAGCTGATGATGTTGAAACAGGCA-AGACCTGACCT 28067 Query 30543 TACGATTTTACCGTCTATTGGCGGGTGGACACTTAGCGACCCTTTCTT----TAAATTGA 30598 | ||| ||||| || |||| || ||||| || || || ||||| | | ||| Sbjct 28066 GAAGATCTTACCTTCCGTTGGTGGTTGGACCCTGGCTGATCCATTCTTCTTCTTCACTGA 28007 Query 30599 ----GTTCTGCCGAAAATCGCGCCGTTTTCGTTGAGTCCGCACGAGAGTATTTGC---GC 30651 ||| | ||| |||| |||||||| || | || || | || | Sbjct 28006 CAAGGTTAAGAGGAA----GCGC----TTCGTTGACTCTG--TGA-AGGACTTCCTTGAA 27958 Query 30652 ACATGGAAATTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGGTAAAGGTGCT 30711 || |||||||| ||||| ||| | ||||| ||||||||||| || || ||||| || ||| Sbjct 27957 ACCTGGAAATTCTTTGATGGAGTGGACATTGACTGGGAGTTCCCTGGTGGTAAGGGCGCT 27898 Query 30712 AATCCCGAATTAGGAGATCCAGAAAAGGATGGAGTAACA--TATGTGCAGTTATTGAAAG 30769 || || || | || || || | | || ||| || || || | |||| | Sbjct 27897 AACCCTGATCTCGGTAGCCCTGATGACG-----GTCACATCTACGTCGAGCTGATGAAGG 27843 Query 30770 AGCTCAGAGAAATGCTAAACGATCTTTCTAAAGAAACAGGGAAAAAATACCAGCTCACCT 30829 | || ||||| ||||| ||||| || ||| | || || || |||||| | || || | Sbjct 27842 AACTGAGAGAGATGCTTAACGAGCTGTCTGCCAAGACTGGAAAGAAATACGAACTGACTT 27783 Query 30830 CGGCGATTAGCGCGGGGTACGATAAAATCTCTATAGTTAATTATGAAAATGCGCAAGAGT 30889 | || || ||| | || | || || || |||| | || || || || ||| Sbjct 27782 CAGCCATCAGCTCTGGTTGGGACAAGATTCAGGTAGTAGACTACAAAGCGGCTCAGCAGT 27723 Query 30890 ATCTTGATCACATTTTTGTTATGACGTACGATTTTAAAGGCGCTTGGTCTAAC 30942 | | || ||||| || | |||| ||||| || || || |||||||| ||| Sbjct 27722 ACATGGACCACATCTTCTTGATGAGCTACGACTTCAAGGGAGCTTGGTCAAAC 27670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421235926352975