Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq898 122 5e-23 seq2877 120 2e-22 seq2646 118 6e-22 seq2307 118 6e-22 seq2237 116 2e-21 seq2681 114 7e-21 seq2203 114 7e-21 seq1243 114 7e-21 seq211 114 7e-21 >seq898 Length=79242 Score = 122 bits (134), Expect = 5e-23 Identities = 87/98 (89%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 11436 GAATTAATA-AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||| |||| ||||| | ||| |||||||||| |||||||||| |||||||||||||| Sbjct 8647 GAAATAATCCAAAAAGCTAATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTA 8588 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||||||||||| |||||||||||||||||||||| Sbjct 8587 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCGT 8550 >seq2877 Length=122481 Score = 120 bits (132), Expect = 2e-22 Identities = 79/88 (90%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| | | | |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 41954 TAAAAAGTGACAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 41895 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| ||||||||||||||||||||| Sbjct 41894 CGCTCTAACCAACTGAGCTAATGGGCCG 41867 Score = 118 bits (130), Expect = 6e-22 Identities = 86/99 (87%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 11442 ATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| | | |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 38931 ATAAAAAAGTATGAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 38872 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGATT 11539 |||||||| ||||||||||||||||||||| || |||| Sbjct 38871 GACGCTCTAACCAACTGAGCTAATGGGCCGATGAAGATT 38833 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 39241 AAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 39300 Query 11513 AACTGAGCTAATGGGCCG 11530 |||||||||||||||||| Sbjct 39301 AACTGAGCTAATGGGCCG 39318 Score = 116 bits (128), Expect = 2e-21 Identities = 78/88 (89%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| | | |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 43328 TAAAAAGTGTGAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 43269 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| ||||||||||||||||||||| Sbjct 43268 CGCTCTAACCAACTGAGCTAATGGGCCG 43241 Score = 109 bits (120), Expect = 3e-19 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| ||||| || || |||||||||| |||||||||||||||||||||| Sbjct 40928 ATAAAAAAGAGCTTTGGCTCACGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 40869 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| ||||||||||||||||||||| Sbjct 40868 ACGCTCTAACCAACTGAGCTAATGGGCCG 40840 >seq2646 Length=143373 Score = 118 bits (130), Expect = 6e-22 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | || |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 86437 AAAAACTTGAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 86378 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 86377 GCTCTAACCAACTGAGCTAATGGGCCG 86351 >seq2307 Length=246846 Score = 118 bits (130), Expect = 6e-22 Identities = 82/94 (87%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||| ||||| | | |||||||||| |||||||||| ||||||||||||||||| Sbjct 146744 AAATAAGAAAAAGATATAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 146685 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||| ||||||||||||||||||||| Sbjct 146684 GCACGACGCTCTAACCAACTGAGCTAATGGGCCG 146651 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 44720 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 44779 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 44780 TGAGCTAATGGGCCG 44794 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||| ||||||||| |||||| Sbjct 39565 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCCCGACGCTCTAACCAAC 39624 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 39625 TGAGCTAATGGGCCG 39639 >seq2237 Length=241990 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2438 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2497 Query 11516 TGAGCTAATGGGCCGT 11531 |||||||||||||||| Sbjct 2498 TGAGCTAATGGGCCGT 2513 >seq2681 Length=145550 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 22850 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 22909 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 22910 TGAGCTAATGGGCCG 22924 >seq2203 Length=268973 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 237863 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 237804 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 237803 TGAGCTAATGGGCCG 237789 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| || Sbjct 264320 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCTAC 264261 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 264260 TGAGCTAATGGGCCG 264246 >seq1243 Length=339424 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 151049 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 150990 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 150989 TGAGCTAATGGGCCG 150975 >seq211 Length=30860 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 7633 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 7574 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 7573 TGAGCTAATGGGCCG 7559 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261481718901100