Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_006636.1 Length=15876 Score E Sequences producing significant alignments: (Bits) Value seq2273 300 2e-77 seq658 266 3e-67 seq1293 237 2e-58 seq2058 143 3e-30 seq2882 140 3e-29 seq1163 123 3e-24 seq1283 100 3e-17 seq1563 87.8 2e-13 >seq2273 Length=230405 Score = 300 bits (332), Expect = 2e-77 Identities = 309/394 (78%), Gaps = 20/394 (5%) Strand=Plus/Minus Query 6167 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6226 ||| ||||| ||||| |||||||||||| || || ||||||||| | |||||||| Sbjct 151329 TTGCACGACTCATGATGCGAAGCATCAGAG--TGCTTAACGATCGAAAA---TTTTTTCG 151275 Query 6227 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGGAATCAAGATA 6286 || ||||| |||||||||||||| ||||||| ||||||||||||| |||||||||||| Sbjct 151274 CCT--TATTTTGGCAACTATTTTTAGTATTATAGCCTTGTTAGTTAAAGGAATCAAGATA 151217 Query 6287 TTTAGCATACTATTGTCTCGATTATTTAATGGAGATTAATTGCATACttttaaaaaattt 6346 ||| ||||||||||||| ||| |||||| ||||||||||| |||||| ||||||| Sbjct 151216 TTTTGCATACTATTGTCGAGATAATTTAACGGAGATTAATTCTATACTTGCTAAAAATTA 151157 Query 6347 atttagtgcaatagaaacgg-aaaaaaacatcaaaatagtttaaaaaattttCCCGTCTG 6405 |||||||||||||||||||| ||||||| |||||||||| | |||||| ||| || | Sbjct 151156 ATTTAGTGCAATAGAAACGGAAAAAAAATATCAAAATAGGTCAAAAAA-AATCCTCTCCG 151098 Query 6406 TCAAACGGGTATG-AACTTTGTAAACACTGTAGCTTGCCAAAAAATCCATTAATTCAGTG 6464 ||| ||||| |||| | |||||||||| ||| |||||| | |||| || ||| Sbjct 151097 TCA----TGTATGAAACTCCGGAAACACTGTAACTTATGAAAAAAACAATTATTTGAGT- 151043 Query 6465 AAATGttttttttttAATTCT--TTGAAGGAATTGCAGGCCCCCTACCGCGGATGGCTAT 6522 || |||||||||||||||| | || ||||| || | | | ||| |||| || Sbjct 151042 -AAGATTTTTTTTTTAATTCTAATCGA--CAATTGTAGATCATCGAATGCGAATGGATAA 150986 Query 6523 GTAACTCAGTGTCGTTTAATTGCAATTAATAAAA 6556 ||| | ||||||||||||| ||||||||||| Sbjct 150985 TTAATTATGTGTCGTTTAATTATAATTAATAAAA 150952 >seq658 Length=99612 Score = 266 bits (294), Expect = 3e-67 Identities = 303/401 (76%), Gaps = 32/401 (8%) Strand=Plus/Minus Query 6167 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6226 ||| ||||| ||||| |||||||||||||||| |||||||||||| || ||||||||| Sbjct 14094 TTGCACGACTCATGATGCGAAGCATCAGAGAGTGCTTTACGATCGAA-AATTTTTTTTCG 14036 Query 6227 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGGAATCAAGATA 6286 || ||||| || ||||||| ||||||||||||| |||||| ||||| Sbjct 14035 CCT--TATTTTGG-------------TATTATAGCCTTGTTAGTTAAAGGAATCGAGATA 13991 Query 6287 TTTAGCATACTATTGTCTCGATTATTTAATGGAGATTAATTGCATACttttaaaaaattt 6346 ||| ||||||||||||| ||| |||||| ||| ||||||| |||||| ||||||| Sbjct 13990 TTTTGCATACTATTGTCGAGATAATTTAACGGAAATTAATTCTATACTTGCTAAAAATTA 13931 Query 6347 atttagtgcaatagaaacggaaaaaaacatcaaaatagtttaaaaaattttCCCGTCTGT 6406 |||||||||||||||| | |||||||| |||||||||| ||||||| || ||| || Sbjct 13930 ATTTAGTGCAATAGAATCAGAAAAAAATATCAAAATAG-GTAAAAAAAAACCCTGTCCGT 13872 Query 6407 CAAACGGGTATG-AACTTTGTAAACACTGTAGCTTGCCAAAAAATCCATTAATTCAGTGA 6465 || ||||| |||| | |||||||||| ||| |||||||| |||| || ||| | Sbjct 13871 CA----TGTATGAAACTCCGGAAACACTGTAACTTATGAAAAAATCAATTATTTGAGTAA 13816 Query 6466 AATGttttttttttAATTCTTTGAAGGAATTGCAGGCCCCCTACCGCGGATGGCTATGTA 6525 | ||||||| |||||| || ||||| || | | | ||| |||| || || Sbjct 13815 GA----TTTTTTTAAATTCT---AATCAATTGTAGATCATCGAATGCGAATGGATAATTA 13763 Query 6526 ACTCAGTGTCGTTTAATTGCAATTAATAA--AATAAAAAAC 6564 | | |||||||||||||| |||| |||| |||||||||| Sbjct 13762 ATTAAGTGTCGTTTAATTTTAATT-ATAATTAATAAAAAAC 13723 >seq1293 Length=53971 Score = 237 bits (262), Expect = 2e-58 Identities = 237/302 (78%), Gaps = 14/302 (5%) Strand=Plus/Plus Query 6258 TACCCTTGTTAGTTAACGGAATCAAGATATTTAGCATACTATTGTCTCGATTATTTAATG 6317 || ||||||||||||| ||||||||||||||| ||||||||||||| ||| |||||| | Sbjct 12216 TAGCCTTGTTAGTTAAAGGAATCAAGATATTTTGCATACTATTGTCGAGATAATTTAACG 12275 Query 6318 GAGATTAATTGCATACttttaaaaaatttatttagtgcaatagaaacggaaaaaaacatc 6377 |||||||||| |||||| |||||||||||||||||||||||||||||||||| | | Sbjct 12276 GAGATTAATTCTATACTTGCTAAAAATTTATTTAGTGCAATAGAAACGGAAAAAA--AAC 12333 Query 6378 aaaatagtttaaaaaattttCCCGTCTGTCAAACGGGTATG-AACTTTGTAAACACTGTA 6436 ||||| | | || ||||||||| ||| |||| ||||| |||| | |||||||||| Sbjct 12334 AAAATTGGTCAACAAATTTTCCTGTCCGTCA----TGTATGAAACTCCGGAAACACTGTA 12389 Query 6437 GCTTGCCAAAAAATCCATTAATTCAGTGAAATGttttttttttAATTCT--TTGAAGGAA 6494 ||| |||||| | |||| || ||| | || |||||||||||||| | || || Sbjct 12390 ACTTATGAAAAAAACTATTATTTGAGT---AAGTATTTTTTTTAATTCTAATCGA--CAA 12444 Query 6495 TTGCAGGCCCCCTACCGCGGATGGCTATGTAACTCAGTGTCGTTTAATTGCAATTAATAA 6554 ||| || | | | ||| |||| || ||| | |||||||||||||| ||||||||| Sbjct 12445 TTGTAGATCATCGAATGCGAATGGATAATTAATTAAGTGTCGTTTAATTATAATTAATAA 12504 Query 6555 AA 6556 || Sbjct 12505 AA 12506 >seq2058 Length=267837 Score = 143 bits (158), Expect = 3e-30 Identities = 109/128 (85%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 6167 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6226 ||| ||||| |||| |||||||||||||||| |||||||||||| ||| ||||| Sbjct 26124 TTGCACGACTCGTGATGCGAAGCATCAGAGAGTGCTTTACGATCGAAAAAAATTTTT--- 26180 Query 6227 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGGAATCAAGATA 6286 | || ||||| |||||||||||||| ||||||| ||||||||||||| |||||||||||| Sbjct 26181 CGCCTTATTTTGGCAACTATTTTTAGTATTATAGCCTTGTTAGTTAAAGGAATCAAGATA 26240 Query 6287 TTTAGCAT 6294 ||| |||| Sbjct 26241 TTTTGCAT 26248 Score = 80.6 bits (88), Expect = 3e-11 Identities = 51/54 (94%), Gaps = 1/54 (2%) Strand=Plus/Plus Query 5832 TTAAA-TATTGCACGGCTCGTGATGCGAAGCATCAGAGAGTGCTTTATGATCGA 5884 ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct 26116 TTAAACTATTGCACGACTCGTGATGCGAAGCATCAGAGAGTGCTTTACGATCGA 26169 >seq2882 Length=114883 Score = 140 bits (154), Expect = 3e-29 Identities = 100/115 (87%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 6258 TACCCTTGTTAGTTAACGGAATCAAGATATTTAGCATACTATTGTCTCGATTATTTAATG 6317 || ||||||||||||| ||||||||||||||| ||||||||||||| ||| |||||| | Sbjct 79962 TAGCCTTGTTAGTTAAAGGAATCAAGATATTTTGCATACTATTGTCGAGATAATTTAACG 79903 Query 6318 GAGATTAATTGCATACttttaaaaaatttatttagtgcaatagaaacggaaaaaa 6372 |||||||||| |||||| ||||||| ||||||||||| ||||||||||| || Sbjct 79902 GAGATTAATTCTATACTTGCTAAAAATTAATTTAGTGCAACAGAAACGGAAATAA 79848 >seq1163 Length=60180 Score = 123 bits (136), Expect = 3e-24 Identities = 91/104 (88%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 6167 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6226 ||| ||||| ||||| |||||||||||||||| |||||||||||| |||||||||||| Sbjct 32889 TTGCACGACTCATGATGCGAAGCATCAGAGAGTGCTTTACGATCGAA-AAATTTTTTTCG 32947 Query 6227 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGT 6270 || ||||| |||||||||||||| ||||||| |||||||||| Sbjct 32948 --CCTTATTTTGGCAACTATTTTTAGTATTATAGCCTTGTTAGT 32989 >seq1283 Length=49108 Score = 100 bits (110), Expect = 3e-17 Identities = 85/104 (82%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 6167 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6226 ||| ||||| ||||| |||||||||||||||| ||||||| |||| ||| ||||| Sbjct 17677 TTGCACGACTCATGATGCGAAGCATCAGAGAGTGCTTTACGACCGAAAAAAATTTTT--- 17621 Query 6227 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGT 6270 | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 17620 CGCCTTATTTTGGCAACTATTTTTAGTATTTTAGCCTTGTAAGT 17577 >seq1563 Length=44330 Score = 87.8 bits (96), Expect = 2e-13 Identities = 85/109 (78%), Gaps = 8/109 (7%) Strand=Plus/Minus Query 6167 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6226 ||| ||||| ||||| |||||||||||||||| ||||||| |||| |||| |||| Sbjct 237 TTGCACGACTCATGATGCGAAGCATCAGAGAGTGCTTTACGACCGAAGAAATATTTT--- 181 Query 6227 CCCCATATTTCGGCAACTATTTTTATT-----ATTATACCCTTGTTAGT 6270 | || ||||| |||||||||||| | |||||| |||||||||| Sbjct 180 CGCCTTATTTTTTCAACTATTTTTAGTATTAAATTATAGCCTTGTTAGT 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50683056522075