Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_006641.1 Length=15959 Score E Sequences producing significant alignments: (Bits) Value seq632 526 2e-145 seq1191 500 9e-138 seq1768 262 4e-66 >seq632 Length=94143 Score = 526 bits (582), Expect = 2e-145 Identities = 396/468 (85%), Gaps = 26/468 (6%) Strand=Plus/Minus Query 15492 TTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTA 15551 ||||||||||||||||| || ||| || |||| || | |||||||||||| || || Sbjct 36994 TTTTTTGGAATAACTTTTAACCGGCTTTATCGATTAACTTCAAAAACTAATCCGCCTTTG 36935 Query 15552 ACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGA 15611 | | |||||||||||| || |||||||||||||||| ||||||||||||||||||||| Sbjct 36934 AGCTTGAAAAACCACGTCAATCGCCACCAAGCTGGTCAGAATCGGTTGATTCGTTCGAGA 36875 Query 15612 GATATCGTGAACGAAAGAAAACCGAAAAAATTGTTTTTTCGGGATTACTCCGAAATTTTC 15671 |||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| Sbjct 36874 GATATCGTGAACGAAAGAAACCCGAAAAAGT-GTTTTTTCGGGATTACTCCGAAATTTGT 36816 Query 15672 GGTTCGATCAATTAAAACCTGAAAATAACTTATGAGGATGATAAAACTGCGTCGAATGGC 15731 ||||||| ||||||||| ||||| ||||| |||||||||||| |||||||||||| Sbjct 36815 GGTTCGAACAATTAAAATTGCAAAATTACTTACGAGGATGATAAAG-TGCGTCGAATGGT 36757 Query 15732 ACCAACCGCGTGGAAATTGGTTGATCCATTCAAAAGTTATTGCGGTTTGAAAATTCCAAA 15791 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 36756 GCCAACCGCGTGAAAATTGGTTGATCCATTCAAAAGTTATTGCGGTTTGAAAATTCCAAA 36697 Query 15792 AATAGTGTTCTATGAAACTTTTATCAGACTTTTGAGCTGGGAGAGCTCAAATGCATTAAA 15851 |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| || Sbjct 36696 AATAGTGTTCTATGAAACTTTTATCAGACTTTCGAGCTGAGAGAGCTCAAATGCATAGAA 36637 Query 15852 ATATTATTTCATTGAACTCAGCGAGCTCAAAATATCACATAAATTATATTTTGTGCTTAA 15911 |||||||||| || ||||||| ||||||||||||||||| Sbjct 36636 ATATTATTTCTTT---------------AAAATATAACATAAATTATATTTTG------- 36599 Query 15912 AAATCTCAAAAATTTCATAAGTACAATTTTTAGCGCCCAGGAATAGAA 15959 | ||||||||| ||||||||||||||| ||||||||||||| ||| Sbjct 36598 --AGCTCAAAAATGTCATAAGTACAATTTCAAGCGCCCAGGAATGGAA 36553 Score = 242 bits (268), Expect = 4e-60 Identities = 328/462 (71%), Gaps = 33/462 (7%) Strand=Plus/Minus Query 1252 TCAAAAACTAATCAGCTCTTAACCATGAAAACCCCCATCGATCGCCAGCAAAAACGTTAG 1311 ||||||||||||| || || | | |||||| || | || ||||||| ||| || || Sbjct 36955 TCAAAAACTAATCCGCCTTTGAGCTTGAAAAACCACGTCAATCGCCACCAAGCTGGTCAG 36896 Query 1312 AATCGGTTGATGCGTTCGTGAGATATCGTTGTCGaaaaaaatcgaaaaaaGTGttttttt 1371 ||||||||||| |||||| |||||||||| ||||| ||| | |||||||||||||| Sbjct 36895 AATCGGTTGATTCGTTCGAGAGATATCGTGAACGAAAGAAACCCGAAAAAGTGTTTTTTC 36836 Query 1372 GTAATAACTTCGAAATTCATGGCTCGATCGATTTAATCTTGAAAATTTTTTATGGAGCTT 1431 | || ||| ||||||| ||| |||| | ||| || | |||||| ||| ||| | Sbjct 36835 GGGATTACTCCGAAATTTGTGGTTCGAACAATTAAAATTGCAAAATTACTTA-CGAGGAT 36777 Query 1432 CAAAAACTGCGTCGATTGCCGCCAACCGCGTGAAAATCGGTTCATTTATTCAAAAGTTAT 1491 | ||| |||||||| || ||||||||||||||||| |||| || ||||||||||||| Sbjct 36776 GATAAAGTGCGTCGAATGGTGCCAACCGCGTGAAAATTGGTTGATCCATTCAAAAGTTAT 36717 Query 1492 TGCCGTTTGAAAATTCAAAAAATTGTG-TCT-TTAAACTGCTATTAGAGTTTTGAGCTCG 1549 ||| |||||||||||| |||||| ||| ||| | ||||| ||| ||| ||| ||||| Sbjct 36716 TGCGGTTTGAAAATTCCAAAAATAGTGTTCTATGAAACTTTTATCAGACTTTCGAGCTGA 36657 Query 1550 AAGAGCTCAAATTGACACAAAAATANNNNNNNNNNNNNNNNNAACGTAATGTGTAGTTTG 1609 ||||||||||| || | ||||| ||| ||| | || |||| Sbjct 36656 GAGAGCTCAAAT--GCATAGAAATATTATTTCTTTAAAATATAACATAAATTATATTTTG 36599 Query 1610 -------AATTGT-TCAAGTACAA--------------------AATGAGCGGGAGGTTG 1641 || ||| |||||||| ||| ||||||| |||| Sbjct 36598 AGCTCAAAAATGTCATAAGTACAATTTCAAGCGCCCAGGAATGGAATTAGCGGGAAGTTG 36539 Query 1642 CAGAGATGGCCTTTAGGGTGAACCGTTTTTCTAAtttttttt 1683 ||| | ||||||||| ||||||||||||||||||||||||| Sbjct 36538 CAGGGGTGGCCTTTAAAGTGAACCGTTTTTCTAATTTTTTTT 36497 Score = 78.8 bits (86), Expect = 9e-11 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 15332 GGTCAAAATCGGTTGATTCGTTCGAGAGATAGCATGAACGAAAGAAAACAGAAAAA 15387 ||||| ||||||||||||||||||||||||| | ||||||||||||| | |||||| Sbjct 36901 GGTCAGAATCGGTTGATTCGTTCGAGAGATATCGTGAACGAAAGAAACCCGAAAAA 36846 >seq1191 Length=55967 Score = 500 bits (554), Expect = 9e-138 Identities = 391/468 (84%), Gaps = 29/468 (6%) Strand=Plus/Minus Query 15492 TTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTA 15551 ||||||||||||||||| || |||| || |||| || | |||||||||||| || || Sbjct 12448 TTTTTTGGAATAACTTTTAACCAGCTTTATCGATTAACTTCAAAAACTAATCCGCCTTTG 12389 Query 15552 ACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGA 15611 | | ||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 12388 AGCTTGAAAAACCACGTCGATCGCCACCAAGCTGGTCAGAATCGGTTGATTCGTTCGT-- 12331 Query 15612 GATATCGTGAACGAAAGAAAACCGAAAAAATTGTTTTTTCGGGATTACTCCGAAATTTTC 15671 ||||| |||||||| | |||||||||||||||||||||||||| Sbjct 12330 -------TGAAC---------CCGAAAAAGT-GTTTTTTCGGGATTACTCCGAAATTTGT 12288 Query 15672 GGTTCGATCAATTAAAACCTGAAAATAACTTATGAGGATGATAAAACTGCGTCGAATGGC 15731 ||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 12287 GGTTCGAACAATTAAAATTGCAAAATTACTTACGAGGATGATAAAACTGCGTCGAATGGT 12228 Query 15732 ACCAACCGCGTGGAAATTGGTTGATCCATTCAAAAGTTATTGCGGTTTGAAAATTCCAAA 15791 ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 12227 GCCAACCGCGTGAAAATTGGTTGATCCATTCAAAAGTTATTGCGGTTTGGAAATTCCAAA 12168 Query 15792 AATAGTGTTCTATGAAACTTTTATCAGACTTTTGAGCTGGGAGAGCTCAAATGCATTAAA 15851 |||||||||||||||||||||||||||||||| |||||| ||||||| |||||||| || Sbjct 12167 AATAGTGTTCTATGAAACTTTTATCAGACTTTCGAGCTGAGAGAGCTGAAATGCATAGAA 12108 Query 15852 ATATTATTTCATTGAACTCAGCGAGCTCAAAATATCACATAAATTATATTTTGTGCTTAA 15911 |||||||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 12107 ATATTATTTCTTTGAACTCAGCGAACTCAAAATATCACATAAATTATATTTTG------- 12055 Query 15912 AAATCTCAAAAATTTCATAAGTACAATTTTTAGCGCCCAGGAATAGAA 15959 | ||||||||| |||||||||||| | | | ||||| |||| ||| Sbjct 12054 --AGCTCAAAAATGTCATAAGTACAA-TATCAAAGCCCACGAATGGAA 12010 Score = 185 bits (204), Expect = 9e-43 Identities = 228/312 (73%), Gaps = 20/312 (6%) Strand=Plus/Minus Query 1252 TCAAAAACTAATCAGCTCTTAACCATGAAAACCCCCATCGATCGCCAGCAAAAACGTTAG 1311 ||||||||||||| || || | | |||||| || | |||||||||| ||| || || Sbjct 12409 TCAAAAACTAATCCGCCTTTGAGCTTGAAAAACCACGTCGATCGCCACCAAGCTGGTCAG 12350 Query 1312 AATCGGTTGATGCGTTCGTGAGATATCGTTGTCGaaaaaaatcgaaaaaaGTGttttttt 1371 ||||||||||| ||||||| || || | |||||||||||||| Sbjct 12349 AATCGGTTGATTCGTTCGT----------TG--------AACCCGAAAAAGTGTTTTTTC 12308 Query 1372 GTAATAACTTCGAAATTCATGGCTCGATCGATTTAATCTTGAAAATTTTTTATGGAGCTT 1431 | || ||| ||||||| ||| |||| | ||| || | |||||| ||| | | | Sbjct 12307 GGGATTACTCCGAAATTTGTGGTTCGAACAATTAAAATTGCAAAATTACTTACGAGGATG 12248 Query 1432 CAAAAACTGCGTCGATTGCCGCCAACCGCGTGAAAATCGGTTCATTTATTCAAAAGTTAT 1491 ||||||||||||| || ||||||||||||||||| |||| || ||||||||||||| Sbjct 12247 ATAAAACTGCGTCGAATGGTGCCAACCGCGTGAAAATTGGTTGATCCATTCAAAAGTTAT 12188 Query 1492 TGCCGTTTGAAAATTCAAAAAATTGTG-TCT-TTAAACTGCTATTAGAGTTTTGAGCTCG 1549 ||| ||||| |||||| |||||| ||| ||| | ||||| ||| ||| ||| ||||| Sbjct 12187 TGCGGTTTGGAAATTCCAAAAATAGTGTTCTATGAAACTTTTATCAGACTTTCGAGCTGA 12128 Query 1550 AAGAGCTCAAAT 1561 |||||| |||| Sbjct 12127 GAGAGCTGAAAT 12116 >seq1768 Length=30625 Score = 262 bits (290), Expect = 4e-66 Identities = 181/205 (88%), Gaps = 10/205 (5%) Strand=Plus/Plus Query 15756 TCCATTCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATAGTGTTCTATGAAACTTTTAT 15815 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 22380 TCCATTCAAAAGTTATTGCGGTTTGGAAATTCCAAAAATAGTGTTCTATGAAACTTTTAT 22439 Query 15816 CAGACTTTTGAGCTGGGAGAGCTCAAATGCATTAAAATATTATTTCATTGAACTCAGCGA 15875 |||||||| |||||| |||||||||||||||| |||||||| ||| ||||||||||||| Sbjct 22440 CAGACTTTCGAGCTGAGAGAGCTCAAATGCATAGAAATATTACTTCTTTGAACTCAGCGA 22499 Query 15876 GCTCAAAATATCACATAAATTA-TATTTTGTGCTTAAAAATCTCAAAAATTTCATAAGTA 15934 ||||||||||||||||||||| ||||||| | ||||||||| ||||||||| Sbjct 22500 ACTCAAAATATCACATAAATTATTATTTTG---------AGCTCAAAAATGTCATAAGTA 22550 Query 15935 CAATTTTTAGCGCCCAGGAATAGAA 15959 |||||| ||| ||||||||| ||| Sbjct 22551 CAATTTCAAGCTCCCAGGAATGGAA 22575 Score = 78.8 bits (86), Expect = 9e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 1479 ATTCAAAAGTTATTGCCGTTTGAAAATTCAAAAAATTGTG-TCT-TTAAACTGCTATTAG 1536 |||||||||||||||| ||||| |||||| |||||| ||| ||| | ||||| ||| || Sbjct 22383 ATTCAAAAGTTATTGCGGTTTGGAAATTCCAAAAATAGTGTTCTATGAAACTTTTATCAG 22442 Query 1537 AGTTTTGAGCTCGAAGAGCTCAAAT 1561 | ||| ||||| ||||||||||| Sbjct 22443 ACTTTCGAGCTGAGAGAGCTCAAAT 22467 Score = 78.8 bits (86), Expect = 9e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 1626 AATGAGCGGGAGGTTGCAGAGATGGCCTTTAGGGTGAACCGTTTTTCTAAtttttttt 1683 ||| ||||||| ||||||| ||||||||||| |||||||||||||||| |||||||| Sbjct 22574 AATTAGCGGGAAGTTGCAGGGATGGCCTTTAAAGTGAACCGTTTTTCTATTTTTTTTT 22631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50948647385850