Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_006645.1 Length=21388 Score E Sequences producing significant alignments: (Bits) Value seq1657 159 5e-35 seq2491 118 1e-22 seq2262 116 5e-22 >seq1657 Length=304069 Score = 159 bits (176), Expect = 5e-35 Identities = 131/157 (83%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 175 TTATTGTTCAAATAAACGATAGAAATGAATTTATGTTAATAAACCATTACAAACTCAAtt 234 || ||||| || | ||||||||| ||| |||| |||||||| |||||||||||||||| Sbjct 3368 TTTTTGTTAAAGTGAACGATAGAG--GAACTTATATTAATAAATCATTACAAACTCAATT 3311 Query 235 tgttttaatataatatttttaa-aactcaacaaaaatatggttataatattgttattttt 293 | ||| ||||| | ||||| | |||||||||| ||||||||||||||||| | | ||| Sbjct 3310 TATTTGAATATGGTTTTTTTTACAACTCAACAATAATATGGTTATAATATTATAACATTT 3251 Query 294 tataaattAATTCAAATGTTAACTGGCCAAACACGGT 330 ||||| ||||||||||||||| ||||| ||| ||||| Sbjct 3250 TATAAGTTAATTCAAATGTTACCTGGCTAAAAACGGT 3214 >seq2491 Length=173481 Score = 118 bits (130), Expect = 1e-22 Identities = 101/123 (82%), Gaps = 10/123 (8%) Strand=Plus/Minus Query 211 TAATAAACCATTACAAACTCAAtttgttttaatataatatttttaaaactcaacaaaaat 270 ||||||| |||||||| ||| ||||||||| || |||||| ||||||| |||| Sbjct 106938 TAATAAATCATTACAA------TTTATTTTAATATGAT-TTTTTACAACTCAA---AAAT 106889 Query 271 atggttataatattgttattttttataaattAATTCAAATGTTAACTGGCCAAACACGGT 330 ||||||| |||||| | ||| |||||||||||| ||||||||||||||||||| ||||| Sbjct 106888 ATGGTTACAATATTATATTTTCTTATAAATTAATCCAAATGTTAACTGGCCAAAAACGGT 106829 Query 331 GCT 333 || Sbjct 106828 ACT 106826 >seq2262 Length=236759 Score = 116 bits (128), Expect = 5e-22 Identities = 143/199 (72%), Gaps = 15/199 (8%) Strand=Plus/Minus Query 142 ACCGTTTGTGGCCACTNNNNNNNNNNNNNNNNTTTATTGTTCAAATAAACGATAGAAATG 201 |||||||||||||||| ||| |||||||||||||||| || |||| Sbjct 92535 ACCGTTTGTGGCCACTGTACCGTTTTTGGCCATTTTTTGTTCAAATAAACGACAGGAATG 92476 Query 202 AA--TTTATGTTAATAAACCATTACAAACTCAAtttgtttta----atataatattttta 255 || ||||| | ||| || ||||||||||||||||| || || ||| || |||||| Sbjct 92475 AATTTTTATATCAATGAATCATTACAAACTCAATTTATTATATTATGTATGATTTTTTTA 92416 Query 256 aaactcaacaa----aaatatggttataatattgttattttttataaattAATTCAAATG 311 |||| || | ||||||||| |||| | ||||||||| |||||||||| Sbjct 92415 TAACTTTACTACTTTTTTTATGGTTATTATAT-----TATTTTATAAACGAATTCAAATG 92361 Query 312 TTAACTGGCCAAACACGGT 330 | ||||||||||| ||||| Sbjct 92360 TAAACTGGCCAAAAACGGT 92342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 68320849788675