Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_006647.1 Length=8785 Score E Sequences producing significant alignments: (Bits) Value seq2273 275 3e-70 seq658 235 3e-58 seq1293 185 5e-43 seq1768 174 9e-40 seq1191 165 5e-37 seq2058 158 7e-35 seq1163 141 5e-30 seq632 138 6e-29 seq2882 127 1e-25 seq1283 118 6e-23 seq1563 100 2e-17 >seq2273 Length=230405 Score = 275 bits (304), Expect = 3e-70 Identities = 215/252 (85%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 222 GTTCCATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttC-GTTTC 280 ||| |||| |||||||| |||| ||||||||||||||||||| ||||||||| ||||| Sbjct 151085 GTTTCATACATGACGGAGAGGATT-TTTTTTGACCTATTTTGATATTTTTTTTCCGTTTC 151143 Query 281 TAGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACA 340 || |||||||||| ||||||| |||| | |||||||||| ||||||||||| |||| Sbjct 151144 TATTGCACTAAATTAATTTTTAGCAAGTATAGAATTAATCTCCGTTAAATTATCTCGACA 151203 Query 341 ATAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTG 400 ||||||||||||||||||||| ||| | |||||||||| ||||||| | |||||||||| Sbjct 151204 ATAGTATGCAAAATATCTTGATTCCTTTAACTAACAAGGCTATAATACTAAAAATAGTTG 151263 Query 401 CCGAAATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATG 460 || |||| ||| ||||||| ||||||||||| ||||| |||||||| ||| ||||||| Sbjct 151264 CCAAAATAAGGCGAAAAAA--TTTTCGATCGTTAAGCA--CTCTGATGCTTCGCATCATG 151319 Query 461 AGTCATGCAATA 472 |||| ||||||| Sbjct 151320 AGTCGTGCAATA 151331 >seq658 Length=99612 Score = 235 bits (260), Expect = 3e-58 Identities = 202/251 (80%), Gaps = 14/251 (6%) Strand=Plus/Plus Query 222 GTTCCATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCT 281 ||| |||| |||||||||||| |||||| |||||||||||| ||||||| | |||| Sbjct 13860 GTTTCATACATGACGGACAGGGTTTTTTTTT-ACCTATTTTGATATTTTTTTCTGATTCT 13918 Query 282 AGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACAA 341 | |||||||||| ||||||| |||| | ||||||| || ||||||||||| ||||| Sbjct 13919 ATTGCACTAAATTAATTTTTAGCAAGTATAGAATTAATTTCCGTTAAATTATCTCGACAA 13978 Query 342 TAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTGC 401 ||||||||||||||||| || ||| | |||||||||| |||||| | | Sbjct 13979 TAGTATGCAAAATATCTCGATTCCTTTAACTAACAAGGCTATAA-------------TAC 14025 Query 402 CGAAATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATGA 461 | |||| ||| |||||||| ||||||||||||||||||||||||||| ||| |||||||| Sbjct 14026 CAAAATAAGGCGAAAAAAAATTTTCGATCGTAAAGCACTCTCTGATGCTTCGCATCATGA 14085 Query 462 GTCATGCAATA 472 ||| ||||||| Sbjct 14086 GTCGTGCAATA 14096 >seq1293 Length=53971 Score = 185 bits (204), Expect = 5e-43 Identities = 138/161 (86%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 222 GTTCCATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttCGTTTCT 281 ||| |||| ||||||||||||||||||| |||||| |||||| | |||||| ||||||| Sbjct 12374 GTTTCATACATGACGGACAGGAAAATTTGTTGACCAATTTTGTT--TTTTTTCCGTTTCT 12317 Query 282 AGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACAA 341 | |||||||||| ||||||| |||| | |||||||||| ||||||||||| ||||| Sbjct 12316 ATTGCACTAAATAAATTTTTAGCAAGTATAGAATTAATCTCCGTTAAATTATCTCGACAA 12257 Query 342 TAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTA 382 |||||||||||||||||||| ||| | |||||||||| ||| Sbjct 12256 TAGTATGCAAAATATCTTGATTCCTTTAACTAACAAGGCTA 12216 >seq1768 Length=30625 Score = 174 bits (192), Expect = 9e-40 Identities = 139/170 (82%), Gaps = 22/170 (13%) Strand=Plus/Minus Query 8355 aaaaaaaaaTTAGAAAAATGATTCACT-------------CTGCAACTTCCCGCTAATTC 8401 ||||||||| |||||||| | |||||| |||||||||||||||||||| Sbjct 22632 AAAAAAAAAATAGAAAAACGGTTCACTTTAAAGGCCATCCCTGCAACTTCCCGCTAATTC 22573 Query 8402 CATTCCTGGGCGCTTAAAATTGTACTTATGACATTTTTGAGTTTTTAAGCTCAAAAT-AT 8460 |||||||||| |||| ||||||||||||||||||||||| |||||||||| || Sbjct 22572 CATTCCTGGGAGCTTGAAATTGTACTTATGACATTTTTG--------AGCTCAAAATAAT 22521 Query 8461 AATTTATGTGTTATTTTGAGCTCGCTGAGTTCTAAGAAATAATATTTCTA 8510 |||||||||| ||||||||| ||||||||||| ||||| ||||||||||| Sbjct 22520 AATTTATGTGATATTTTGAGTTCGCTGAGTTCAAAGAAGTAATATTTCTA 22471 >seq1191 Length=55967 Score = 165 bits (182), Expect = 5e-37 Identities = 137/170 (81%), Gaps = 22/170 (13%) Strand=Plus/Plus Query 8354 GaaaaaaaaaTTAGAAAAATGATTCACT-------------CTGCAACTTCCCGCTAATT 8400 || ||||||| |||||||| | |||||| ||||||||||||||||||| Sbjct 11952 GACAAAAAAAATAGAAAAACGGTTCACTTTAAAGGCCATCCCTGCAACTTCCCGCTAATT 12011 Query 8401 CCATTCCTGGGCGCTTAAAATTGTACTTATGACATTTTTGAGTTTTTAAGCTCAAAATAT 8460 |||||| ||||| || | ||||||||||||||||||||||| |||||||||| Sbjct 12012 CCATTCGTGGGCT-TTGATATTGTACTTATGACATTTTTGAG--------CTCAAAATAT 12062 Query 8461 AATTTATGTGTTATTTTGAGCTCGCTGAGTTCTAAGAAATAATATTTCTA 8510 |||||||||| ||||||||| ||||||||||| ||||||||||||||||| Sbjct 12063 AATTTATGTGATATTTTGAGTTCGCTGAGTTCAAAGAAATAATATTTCTA 12112 >seq2058 Length=267837 Score = 158 bits (174), Expect = 7e-35 Identities = 111/127 (87%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 346 ATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTGCCGAA 405 |||||||||||||||| ||| | |||||||||| ||||||| | |||||||||||| || Sbjct 26248 ATGCAAAATATCTTGATTCCTTTAACTAACAAGGCTATAATACTAAAAATAGTTGCCAAA 26189 Query 406 ATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATGAGTCA 465 || ||| |||||| |||||||||||||||||||||||||||| ||| ||||| ||||| Sbjct 26188 ATAAGGCGAAAAATTTTTTTCGATCGTAAAGCACTCTCTGATGCTTCGCATCACGAGTCG 26129 Query 466 TGCAATA 472 ||||||| Sbjct 26128 TGCAATA 26122 >seq1163 Length=60180 Score = 141 bits (156), Expect = 5e-30 Identities = 93/103 (90%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 370 ACTAACAAGACTATAATGATGAAAATAGTTGCCGAAATGAGGTGaaaaaaaTTTTTCGAT 429 ||||||||| ||||||| | |||||||||||| |||| ||| ||||||||||||||||| Sbjct 32989 ACTAACAAGGCTATAATACTAAAAATAGTTGCCAAAATAAGGCGAAAAAAATTTTTCGAT 32930 Query 430 CGTAAAGCACTCTCTGATGTTTCTCATCATGAGTCATGCAATA 472 ||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct 32929 CGTAAAGCACTCTCTGATGCTTCGCATCATGAGTCGTGCAATA 32887 >seq632 Length=94143 Score = 138 bits (152), Expect = 6e-29 Identities = 110/136 (81%), Gaps = 21/136 (15%) Strand=Plus/Plus Query 8355 aaaaaaaaaTTAGAAAAATGATTCACT-------------CTGCAACTTCCCGCTAATTC 8401 |||||||||||||||||| | |||||| |||||||||||||||||||| Sbjct 36496 AAAAAAAAATTAGAAAAACGGTTCACTTTAAAGGCCACCCCTGCAACTTCCCGCTAATTC 36555 Query 8402 CATTCCTGGGCGCTTAAAATTGTACTTATGACATTTTTGAGTTTTTAAGCTCAAAATATA 8461 ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 36556 CATTCCTGGGCGCTTGAAATTGTACTTATGACATTTTTG--------AGCTCAAAATATA 36607 Query 8462 ATTTATGTGTTATTTT 8477 |||||||| |||||| Sbjct 36608 ATTTATGTTATATTTT 36623 >seq2882 Length=114883 Score = 127 bits (140), Expect = 1e-25 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 268 tttttttCGTTTCTAGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTA 327 || ||| ||||||| |||||||||| ||||||| |||| | |||||||||| ||| Sbjct 79848 TTATTTCCGTTTCTGTTGCACTAAATTAATTTTTAGCAAGTATAGAATTAATCTCCGTTA 79907 Query 328 AATTATCTTGACAATAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTA 382 |||||||| ||||||||||||||||||||||||| ||| | |||||||||| ||| Sbjct 79908 AATTATCTCGACAATAGTATGCAAAATATCTTGATTCCTTTAACTAACAAGGCTA 79962 >seq1283 Length=49108 Score = 118 bits (130), Expect = 6e-23 Identities = 88/103 (85%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 370 ACTAACAAGACTATAATGATGAAAATAGTTGCCGAAATGAGGTGaaaaaaaTTTTTCGAT 429 ||| ||||| ||| ||| | |||||||||||| |||| ||| |||||| ||||||| | Sbjct 17577 ACTTACAAGGCTAAAATACTAAAAATAGTTGCCAAAATAAGGCGAAAAATTTTTTTCGGT 17636 Query 430 CGTAAAGCACTCTCTGATGTTTCTCATCATGAGTCATGCAATA 472 ||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct 17637 CGTAAAGCACTCTCTGATGCTTCGCATCATGAGTCGTGCAATA 17679 >seq1563 Length=44330 Score = 100 bits (110), Expect = 2e-17 Identities = 87/108 (81%), Gaps = 5/108 (5%) Strand=Plus/Plus Query 370 ACTAACAAGACTATAATGA-----TGAAAATAGTTGCCGAAATGAGGTGaaaaaaaTTTT 424 ||||||||| ||||||| | |||||||||| |||| ||| ||||| | || | Sbjct 132 ACTAACAAGGCTATAATTTAATACTAAAAATAGTTGAAAAAATAAGGCGAAAATATTTCT 191 Query 425 TCGATCGTAAAGCACTCTCTGATGTTTCTCATCATGAGTCATGCAATA 472 ||| |||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct 192 TCGGTCGTAAAGCACTCTCTGATGCTTCGCATCATGAGTCGTGCAATA 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27995862982100