Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_006648.1 Length=15158 Score E Sequences producing significant alignments: (Bits) Value seq2273 264 1e-66 seq658 239 4e-59 seq1293 215 5e-52 seq2058 134 1e-27 seq2882 131 2e-26 seq1163 123 2e-24 seq1283 100 3e-17 seq1563 87.8 2e-13 >seq2273 Length=230405 Score = 264 bits (292), Expect = 1e-66 Identities = 300/395 (76%), Gaps = 21/395 (5%) Strand=Plus/Minus Query 6803 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6862 ||| ||||| ||||| |||||||||||| || || ||||||||| | |||||||| Sbjct 151329 TTGCACGACTCATGATGCGAAGCATCAGAG--TGCTTAACGATCGAAAA---TTTTTTCG 151275 Query 6863 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATA 6922 || ||||| |||||||||||||| ||||||| ||||||||||||| | |||||||||| Sbjct 151274 CCT--TATTTTGGCAACTATTTTTAGTATTATAGCCTTGTTAGTTAAAGGAATCAAGATA 151217 Query 6923 TTAAGCATACTATTGTCTCGATTATTTAATGGAGATTAATTGGATACttttaaaaaattt 6982 || ||||||||||||| ||| |||||| ||||||||||| |||||| ||||||| Sbjct 151216 TTTTGCATACTATTGTCGAGATAATTTAACGGAGATTAATTCTATACTTGCTAAAAATTA 151157 Query 6983 atttagtgcaatagaaacgg-aaaaaaacatcaaaatagtttaaaaaattttCCCGTCCG 7041 |||||||||||||||||||| ||||||| |||||||||| | |||||| ||| |||| Sbjct 151156 ATTTAGTGCAATAGAAACGGAAAAAAAATATCAAAATAGGTCAAAAAA-AATCCTCTCCG 151098 Query 7042 TCAAACGGATATGAACCT-TGTAAACACTGTAGCTTGCCAAAAAATCCATTAATTCAGTG 7100 ||| |||||| || | |||||||||| ||| |||||| | |||| || ||| Sbjct 151097 TCA----TGTATGAAACTCCGGAAACACTGTAACTTATGAAAAAAACAATTATTTGAGTA 151042 Query 7101 AAATGTTNNNNNNNNNAATTCT--TTGAAGGAATTGCAGGCCCCCTACCGCGGATGGCTA 7158 | || || |||||| | || ||||| || | | | ||| |||| || Sbjct 151041 AGATTTT---TTTTTTAATTCTAATCGA--CAATTGTAGATCATCGAATGCGAATGGATA 150987 Query 7159 TGTAACTCAGTGTCGTTTAATTGCAATTAATAAAA 7193 ||| | ||||||||||||| ||||||||||| Sbjct 150986 ATTAATTATGTGTCGTTTAATTATAATTAATAAAA 150952 >seq658 Length=99612 Score = 239 bits (264), Expect = 4e-59 Identities = 296/401 (74%), Gaps = 33/401 (8%) Strand=Plus/Minus Query 6803 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6862 ||| ||||| ||||| |||||||||||||||| |||||||||||| || ||||||||| Sbjct 14094 TTGCACGACTCATGATGCGAAGCATCAGAGAGTGCTTTACGATCGAA-AATTTTTTTTCG 14036 Query 6863 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATA 6922 || ||||| || ||||||| ||||||||||||| | |||| ||||| Sbjct 14035 CCT--TATTTTGG-------------TATTATAGCCTTGTTAGTTAAAGGAATCGAGATA 13991 Query 6923 TTAAGCATACTATTGTCTCGATTATTTAATGGAGATTAATTGGATACttttaaaaaattt 6982 || ||||||||||||| ||| |||||| ||| ||||||| |||||| ||||||| Sbjct 13990 TTTTGCATACTATTGTCGAGATAATTTAACGGAAATTAATTCTATACTTGCTAAAAATTA 13931 Query 6983 atttagtgcaatagaaacggaaaaaaacatcaaaatagtttaaaaaattttCCCGTCCGT 7042 |||||||||||||||| | |||||||| |||||||||| ||||||| || |||||| Sbjct 13930 ATTTAGTGCAATAGAATCAGAAAAAAATATCAAAATAG-GTAAAAAAAAACCCTGTCCGT 13872 Query 7043 CAAACGGATATGAACCT-TGTAAACACTGTAGCTTGCCAAAAAATCCATTAATTCAGTGA 7101 || |||||| || | |||||||||| ||| |||||||| |||| || ||| | Sbjct 13871 CA----TGTATGAAACTCCGGAAACACTGTAACTTATGAAAAAATCAATTATTTGAGTAA 13816 Query 7102 AATGTTNNNNNNNNNAATTCTTTGAAGGAATTGCAGGCCCCCTACCGCGGATGGCTATGT 7161 || || |||||| || ||||| || | | | ||| |||| || | Sbjct 13815 GATTTT-----TTTAAATTCT---AATCAATTGTAGATCATCGAATGCGAATGGATAATT 13764 Query 7162 AACTCAGTGTCGTTTAATTGCAATTAATAA--AATaaaaaa 7200 || | |||||||||||||| |||| |||| ||||||||| Sbjct 13763 AATTAAGTGTCGTTTAATTTTAATT-ATAATTAATAAAAAA 13724 >seq1293 Length=53971 Score = 215 bits (238), Expect = 5e-52 Identities = 253/336 (75%), Gaps = 16/336 (5%) Strand=Plus/Plus Query 6894 TACCCTTGTTAGTTAACGAAATCAAGATATTAAGCATACTATTGTCTCGATTATTTAATG 6953 || ||||||||||||| | |||||||||||| ||||||||||||| ||| |||||| | Sbjct 12216 TAGCCTTGTTAGTTAAAGGAATCAAGATATTTTGCATACTATTGTCGAGATAATTTAACG 12275 Query 6954 GAGATTAATTGGATACttttaaaaaatttatttagtgcaatagaaacggaaaaaaacatc 7013 |||||||||| |||||| |||||||||||||||||||||||||||||||||| | | Sbjct 12276 GAGATTAATTCTATACTTGCTAAAAATTTATTTAGTGCAATAGAAACGGAAAAAA--AAC 12333 Query 7014 aaaatagtttaaaaaattttCCCGTCCGTCAAACGGATATGAACCT-TGTAAACACTGTA 7072 ||||| | | || ||||||||| |||||||| |||||| || | |||||||||| Sbjct 12334 AAAATTGGTCAACAAATTTTCCTGTCCGTCA----TGTATGAAACTCCGGAAACACTGTA 12389 Query 7073 GCTTGCCAAAAAATCCATTAATTCAGTGAAATGTTNNNNNNNNNAATTCT--TTGAAGGA 7130 ||| |||||| | |||| || ||| || | || |||||| | || | Sbjct 12390 ACTTATGAAAAAAACTATTATTTGAGT-AAGTATT---TTTTTTAATTCTAATCGA--CA 12443 Query 7131 ATTGCAGGCCCCCTACCGCGGATGGCTATGTAACTCAGTGTCGTTTAATTGCAATTAATA 7190 |||| || | | | ||| |||| || ||| | |||||||||||||| |||||||| Sbjct 12444 ATTGTAGATCATCGAATGCGAATGGATAATTAATTAAGTGTCGTTTAATTATAATTAATA 12503 Query 7191 AAATaaaaaaaCCAAAAGACTGTATATCTTTATATA 7226 ||| | | ||| | |||| |||||||| |||||| Sbjct 12504 AAA-ACGACAACTACAAGATTGTATATCGATATATA 12538 >seq2058 Length=267837 Score = 134 bits (148), Expect = 1e-27 Identities = 107/128 (84%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 6803 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6862 ||| ||||| |||| |||||||||||||||| |||||||||||| ||| ||||| Sbjct 26124 TTGCACGACTCGTGATGCGAAGCATCAGAGAGTGCTTTACGATCGAAAAAAATTTTT--- 26180 Query 6863 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATA 6922 | || ||||| |||||||||||||| ||||||| ||||||||||||| | |||||||||| Sbjct 26181 CGCCTTATTTTGGCAACTATTTTTAGTATTATAGCCTTGTTAGTTAAAGGAATCAAGATA 26240 Query 6923 TTAAGCAT 6930 || |||| Sbjct 26241 TTTTGCAT 26248 >seq2882 Length=114883 Score = 131 bits (144), Expect = 2e-26 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 6894 TACCCTTGTTAGTTAACGAAATCAAGATATTAAGCATACTATTGTCTCGATTATTTAATG 6953 || ||||||||||||| | |||||||||||| ||||||||||||| ||| |||||| | Sbjct 79962 TAGCCTTGTTAGTTAAAGGAATCAAGATATTTTGCATACTATTGTCGAGATAATTTAACG 79903 Query 6954 GAGATTAATTGGATACttttaaaaaatttatttagtgcaatagaaacggaaaaaa 7008 |||||||||| |||||| ||||||| ||||||||||| ||||||||||| || Sbjct 79902 GAGATTAATTCTATACTTGCTAAAAATTAATTTAGTGCAACAGAAACGGAAATAA 79848 >seq1163 Length=60180 Score = 123 bits (136), Expect = 2e-24 Identities = 91/104 (88%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 6803 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6862 ||| ||||| ||||| |||||||||||||||| |||||||||||| |||||||||||| Sbjct 32889 TTGCACGACTCATGATGCGAAGCATCAGAGAGTGCTTTACGATCGAA-AAATTTTTTTCG 32947 Query 6863 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGT 6906 || ||||| |||||||||||||| ||||||| |||||||||| Sbjct 32948 --CCTTATTTTGGCAACTATTTTTAGTATTATAGCCTTGTTAGT 32989 >seq1283 Length=49108 Score = 100 bits (110), Expect = 3e-17 Identities = 85/104 (82%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 6803 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6862 ||| ||||| ||||| |||||||||||||||| ||||||| |||| ||| ||||| Sbjct 17677 TTGCACGACTCATGATGCGAAGCATCAGAGAGTGCTTTACGACCGAAAAAAATTTTT--- 17621 Query 6863 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGT 6906 | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 17620 CGCCTTATTTTGGCAACTATTTTTAGTATTTTAGCCTTGTAAGT 17577 >seq1563 Length=44330 Score = 87.8 bits (96), Expect = 2e-13 Identities = 85/109 (78%), Gaps = 8/109 (7%) Strand=Plus/Minus Query 6803 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6862 ||| ||||| ||||| |||||||||||||||| ||||||| |||| |||| |||| Sbjct 237 TTGCACGACTCATGATGCGAAGCATCAGAGAGTGCTTTACGACCGAAGAAATATTTT--- 181 Query 6863 CCCCATATTTCGGCAACTATTTTTATT-----ATTATACCCTTGTTAGT 6906 | || ||||| |||||||||||| | |||||| |||||||||| Sbjct 180 CGCCTTATTTTTTCAACTATTTTTAGTATTAAATTATAGCCTTGTTAGT 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48385535555925