Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq1165 100 6e-17 seq1511 80.6 5e-11 >seq1165 Length=63786 Score = 100 bits (110), Expect = 6e-17 Identities = 316/480 (66%), Gaps = 11/480 (2%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||| || |||||||||||||| | ||| | |||||||| ||| | | ||||| Sbjct 20915 ACATTCTCTTCATAAATATGCTTTAAATTTACATCATCTTGTTTGAAAATAATAAGAAAA 20974 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || |||| || | | || ||||| || ||| | |||||||||| | | |||||| Sbjct 20975 TTAACATTGTCACGTAACAATTGCTTCGGAATTTTAGAATAAGTTTGAGATAAATAGAAA 21034 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 | ||| | | || |||| |||||| |||||| || ||| | || |||||| Sbjct 21035 CAGTCTATTTGTTTATGTCTACCCATACAGAAATAATTGCGGATATTTATTTGATTTTCA 21094 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCA---GGCTTGATT 7521 ||||||||||| || || || | | || || | ||| | ||||| || ||| Sbjct 21095 CAAGCAACATCATCGAAAATAAATACAGAATTTG--TTA-AAGCTTCACTCGGAGAAATT 21151 Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAAT-ACCATCAATCTGTTTAAGCAGTGT 7580 ||| ||| || || |||| | | || ||| | || ||| ||||| | Sbjct 21152 ACATCTTTATCATCATTGAACTCGTAAAAGTTAATCTGCGGCACTCTTTTTAATACTTCG 21211 Query 7581 CTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAA 7640 || || ||| |||| |||| ||| | || || ||||||||||| | ||| | ||| Sbjct 21212 GTCAAGAAAC-GATATTTTGATTGAAAAGAAGTTTTCGAGTAAAGATAAAGATTTTGAAA 21270 Query 7641 CCTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGA 7700 | ||||| ||| |||||| | | | | || ||||| || || ||||| || || Sbjct 21271 TTTTAAACCATTTTCATGTACCAGTAAACTAATCATGGCATTAGTTTTACCACAATTGGA 21330 Query 7701 TGGCCCGCAAAACACTGCAT-GGATACTGTTGGGAAGTAAAGCACCGTGTC-GTTTGAGC 7758 || ||||| | | | ||| | || | || || | |||||||| ||||| | |||||| Sbjct 21331 AGGACCGCATATTA-TACATCGAATCGTATTAGGCAATAAAGCACTGTGTCTGATTGAGC 21389 >seq1511 Length=44173 Score = 80.6 bits (88), Expect = 5e-11 Identities = 104/141 (74%), Gaps = 12/141 (9%) Strand=Plus/Plus Query 4843 AACAAGCCGATCTATGTAGGGTTTAGTATATTAGATTTATCTAAAATTTATATTTATGAC 4902 ||||| || || ||| |||||||| |||| |||||| ||| ||| || |||| Sbjct 31184 AACAAACCAATTTATTTAGGGTTTTGTATTTTAGAT------AAACCTTA-ATGTATGTT 31236 Query 4903 TTTCATTACAATTATGTTATGCAAAA-TTATGTAAATACCTCAAAATTATTGTACACTGA 4961 ||||||||||||||| | || |||| || |||||| | ||||||||||| || || Sbjct 31237 TTTCATTACAATTATATGATTAAAAAGTTTTGTAAAATC----AAATTATTGTATACAGA 31292 Query 4962 CACAGATAGTCTAATTTACCA 4982 || |||||| |||| || || Sbjct 31293 TACGGATAGTTTAATATATCA 31313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97970938748150