Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_006659.1 Length=41573 Score E Sequences producing significant alignments: (Bits) Value seq632 298 1e-76 seq1191 246 8e-61 seq1768 96.9 9e-16 >seq632 Length=94143 Score = 298 bits (330), Expect = 1e-76 Identities = 274/344 (80%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189 |||||||||||||| |||||||| ||||||| | ||||||||||| || || | || Sbjct 36988 GGAATAACTTTTAACCGGCTTTATCGATTAACTTCAAAAACTAATCCGCCTTTGAGCTTG 36929 Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249 | |||||||||| || || || | ||||| ||||||||||||||||| ||| |||| Sbjct 36928 AAAAACCACGTCAATCGCCACCAAGCTGGTCAGAATCGGTTGATTCGTTCGAGAGATATC 36869 Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTCCGAAATTCGTGGTTCA 40309 || |||||||||| ||| ||||||||||||||||| |||||||||||||| ||||||| Sbjct 36868 GTGAACGAAAGAAACCCG-AAAAAGTGTTTTTTCGGGATTACTCCGAAATTTGTGGTTCG 36810 Query 40310 ATCAAATTGAACTTAAAGATTTTTTATGAGGCTTAAAAAATTGCGTTGAATGTCACCAAC 40369 | ||| | || | || ||| ||| |||| | | ||| ||||| ||||| ||||| Sbjct 36809 AACAATTAAAATTGCAAAATTACTTACGAGG-ATGATAAAGTGCGTCGAATGGTGCCAAC 36751 Query 40370 CGCGTAAAAATCGTTCCATTTATTCAAAAGTTATCGCGGTTTGAAAATTTAAAAAATAGT 40429 ||||| ||||| | | || ||||||||||||| |||||||||||||| ||||||||| Sbjct 36750 CGCGTGAAAATTGGTTGATCCATTCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATAGT 36691 Query 40430 GTTGTATCAAACTTCTATCAGACTTTTGAGCTCGAAGAGCTAAA 40473 ||| ||| |||||| ||||||||||| ||||| |||||| || Sbjct 36690 GTTCTATGAAACTTTTATCAGACTTTCGAGCTGAGAGAGCTCAA 36647 >seq1191 Length=55967 Score = 246 bits (272), Expect = 8e-61 Identities = 259/344 (75%), Gaps = 19/344 (6%) Strand=Plus/Minus Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189 |||||||||||||| | |||||| ||||||| | ||||||||||| || || | || Sbjct 12442 GGAATAACTTTTAACCAGCTTTATCGATTAACTTCAAAAACTAATCCGCCTTTGAGCTTG 12383 Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249 | ||||||||||||| || || | ||||| |||||||||||||||||| Sbjct 12382 AAAAACCACGTCGATCGCCACCAAGCTGGTCAGAATCGGTTGATTCGTTCGT-------- 12331 Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTCCGAAATTCGTGGTTCA 40309 ||| ||| ||||||||||||||||| |||||||||||||| ||||||| Sbjct 12330 --TGA---------ACCCGAAAAAGTGTTTTTTCGGGATTACTCCGAAATTTGTGGTTCG 12282 Query 40310 ATCAAATTGAACTTAAAGATTTTTTATGAGGCTTAAAAAATTGCGTTGAATGTCACCAAC 40369 | ||| | || | || ||| ||| |||| | | |||| ||||| ||||| ||||| Sbjct 12281 AACAATTAAAATTGCAAAATTACTTACGAGGATGATAAAACTGCGTCGAATGGTGCCAAC 12222 Query 40370 CGCGTAAAAATCGTTCCATTTATTCAAAAGTTATCGCGGTTTGAAAATTTAAAAAATAGT 40429 ||||| ||||| | | || ||||||||||||| |||||||| ||||| ||||||||| Sbjct 12221 CGCGTGAAAATTGGTTGATCCATTCAAAAGTTATTGCGGTTTGGAAATTCCAAAAATAGT 12162 Query 40430 GTTGTATCAAACTTCTATCAGACTTTTGAGCTCGAAGAGCTAAA 40473 ||| ||| |||||| ||||||||||| ||||| |||||| || Sbjct 12161 GTTCTATGAAACTTTTATCAGACTTTCGAGCTGAGAGAGCTGAA 12118 >seq1768 Length=30625 Score = 96.9 bits (106), Expect = 9e-16 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 40391 ATTCAAAAGTTATCGCGGTTTGAAAATTTAAAAAATAGTGTTGTATCAAACTTCTATCAG 40450 ||||||||||||| |||||||| ||||| |||||||||||| ||| |||||| |||||| Sbjct 22383 ATTCAAAAGTTATTGCGGTTTGGAAATTCCAAAAATAGTGTTCTATGAAACTTTTATCAG 22442 Query 40451 ACTTTTGAGCTCGAAGAGCTAAA 40473 ||||| ||||| |||||| || Sbjct 22443 ACTTTCGAGCTGAGAGAGCTCAA 22465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132907304468250