Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_006660.1 Length=20197 Score E Sequences producing significant alignments: (Bits) Value seq1191 527 8e-146 seq632 527 8e-146 seq1768 336 3e-88 >seq1191 Length=55967 Score = 527 bits (584), Expect = 8e-146 Identities = 431/528 (82%), Gaps = 30/528 (6%) Strand=Plus/Plus Query 9499 CTGa-aaaaaaaTTAGAAAAACGGTTCACCCTAAAGGCCATCCGTGCAACTTCCCGCTAA 9557 |||| ||||||| |||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 11950 CTGACAAAAAAAATAGAAAAACGGTTCACTTTAAAGGCCATCCCTGCAACTTCCCGCTAA 12009 Query 9558 TTCTATTCCTGGGCGCTAAAAATTGTACTTATGACATTTTTGAGATTTTTAAGCACAAAA 9617 ||| |||| ||||| | | | |||||||||||||||||||||| | ||||| Sbjct 12010 TTCCATTCGTGGGCTTTGATA-TTGTACTTATGACATTTTTGAGCT---------CAAAA 12059 Query 9618 TATAATTTATGTGATATTTTGAGCTCGCTCAGTTCAATGAAATAATATTTTAATGCATTT 9677 ||||||||||||||||||||||| ||||| ||||||| |||||||||||| |||||||| Sbjct 12060 TATAATTTATGTGATATTTTGAGTTCGCTGAGTTCAAAGAAATAATATTTCTATGCATTT 12119 Query 9678 GAGCTCTCCCAGCTCAAAAGTGTGATAGAAGTTTCATAGAACACTATTTTTGGAATTTTC 9737 ||||||| |||||| ||||| ||||| |||||||||||||||||||||||||||||| | Sbjct 12120 CAGCTCTCTCAGCTCGAAAGTCTGATAAAAGTTTCATAGAACACTATTTTTGGAATTTCC 12179 Query 9738 AAACCGCAATAACTTTTGAATGGATCAACCAATTTCCACGCGGTTGGTGCCATTCGACGC 9797 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 12180 AAACCGCAATAACTTTTGAATGGATCAACCAATTTTCACGCGGTTGGCACCATTCGACGC 12239 Query 9798 AGTTTTATCATCCTCATAAGTTATTTTCAGGTTTTAATTGATCGAACCGAAAATTTCGGA 9857 ||||||||||||||| ||||| ||||| ||||||||| ||||||| |||||||||| Sbjct 12240 AGTTTTATCATCCTCGTAAGTAATTTTGCAATTTTAATTGTTCGAACCACAAATTTCGGA 12299 Query 9858 GTAATCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTCACGATATCTCTCGAACGAAT 9917 ||||||||| | || || || ||||||||| Sbjct 12300 GTAATCCCG------------------AAAAAACACTTTTTCGGGTTC-AACGAACGAAT 12340 Query 9918 CAACCGATTTTGACCAGCTTGGTGGCAATCGACGTGGTTTTTTGATGTTAAGAGCTGATT 9977 ||||||||| |||||||||||||||| ||||||||||||||| | | || || |||| Sbjct 12341 CAACCGATTCTGACCAGCTTGGTGGCGATCGACGTGGTTTTTCAAGCTCAAAGGCGGATT 12400 Query 9978 AGTTTTTGGAATTGATCGGTAGAGCTATTTAAAAGTTATTCCAAAAAA 10025 |||||||| | || |||| || |||| |||||||||||||||||||| Sbjct 12401 AGTTTTTGAAGTTAATCGATAAAGCTGGTTAAAAGTTATTCCAAAAAA 12448 >seq632 Length=94143 Score = 527 bits (584), Expect = 8e-146 Identities = 425/524 (81%), Gaps = 26/524 (5%) Strand=Plus/Plus Query 9502 aaaaaaaaTTAGAAAAACGGTTCACCCTAAAGGCCATCCGTGCAACTTCCCGCTAATTCT 9561 ||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||| Sbjct 36497 AAAAAAAATTAGAAAAACGGTTCACTTTAAAGGCCACCCCTGCAACTTCCCGCTAATTCC 36556 Query 9562 ATTCCTGGGCGCTAAAAATTGTACTTATGACATTTTTGAGATTTTTAAGCACAAAATATA 9621 ||||||||||||| ||||||||||||||||||||||||| | ||||||||| Sbjct 36557 ATTCCTGGGCGCTTGAAATTGTACTTATGACATTTTTGAGCT---------CAAAATATA 36607 Query 9622 ATTTATGTGATATTTTGAGCTCGCTCAGTTCAATGAAATAATATTTTAATGCATTTGAGC 9681 |||||||| ||||||| || |||||||||||| |||||||||||| Sbjct 36608 ATTTATGTTATATTTT---------------AAAGAAATAATATTTCTATGCATTTGAGC 36652 Query 9682 TCTCCCAGCTCAAAAGTGTGATAGAAGTTTCATAGAACACTATTTTTGGAATTTTCAAAC 9741 |||| |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 36653 TCTCTCAGCTCGAAAGTCTGATAAAAGTTTCATAGAACACTATTTTTGGAATTTTCAAAC 36712 Query 9742 CGCAATAACTTTTGAATGGATCAACCAATTTCCACGCGGTTGGTGCCATTCGACGCAGTT 9801 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | Sbjct 36713 CGCAATAACTTTTGAATGGATCAACCAATTTTCACGCGGTTGGCACCATTCGACGCA-CT 36771 Query 9802 TTATCATCCTCATAAGTTATTTTCAGGTTTTAATTGATCGAACCGAAAATTTCGGAGTAA 9861 ||||||||||| ||||| ||||| ||||||||| ||||||| |||||||||||||| Sbjct 36772 TTATCATCCTCGTAAGTAATTTTGCAATTTTAATTGTTCGAACCACAAATTTCGGAGTAA 36831 Query 9862 TCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTCACGATATCTCTCGAACGAATCAAC 9921 ||||| ||||||||||||||||||||||||||||| Sbjct 36832 TCCCG-AAAAAACACTTTTTCGGGTTTCTTTCGTTCACGATATCTCTCGAACGAATCAAC 36890 Query 9922 CGATTTTGACCAGCTTGGTGGCAATCGACGTGGTTTTTTGATGTTAAGAGCTGATTAGTT 9981 ||||| |||||||||||||||| || |||||||||||| | | || || |||||||| Sbjct 36891 CGATTCTGACCAGCTTGGTGGCGATTGACGTGGTTTTTCAAGCTCAAAGGCGGATTAGTT 36950 Query 9982 TTTGGAATTGATCGGTAGAGCTATTTAAAAGTTATTCCAAAAAA 10025 |||| | || |||| || ||| |||||||||||||||||||| Sbjct 36951 TTTGAAGTTAATCGATAAAGCCGGTTAAAAGTTATTCCAAAAAA 36994 >seq1768 Length=30625 Score = 336 bits (372), Expect = 3e-88 Identities = 231/261 (89%), Gaps = 10/261 (4%) Strand=Plus/Minus Query 9502 aaaaaaaaTTAGAAAAACGGTTCACCCTAAAGGCCATCCGTGCAACTTCCCGCTAATTCT 9561 |||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 22631 AAAAAAAAATAGAAAAACGGTTCACTTTAAAGGCCATCCCTGCAACTTCCCGCTAATTCC 22572 Query 9562 ATTCCTGGGCGCTAAAAATTGTACTTATGACATTTTTGAGATTTTTAAGCACAAAATA-T 9620 ||||||||| ||| ||||||||||||||||||||||||| | ||||||| | Sbjct 22571 ATTCCTGGGAGCTTGAAATTGTACTTATGACATTTTTGAGCT---------CAAAATAAT 22521 Query 9621 AATTTATGTGATATTTTGAGCTCGCTCAGTTCAATGAAATAATATTTTAATGCATTTGAG 9680 |||||||||||||||||||| ||||| ||||||| ||| |||||||| ||||||||||| Sbjct 22520 AATTTATGTGATATTTTGAGTTCGCTGAGTTCAAAGAAGTAATATTTCTATGCATTTGAG 22461 Query 9681 CTCTCCCAGCTCAAAAGTGTGATAGAAGTTTCATAGAACACTATTTTTGGAATTTTCAAA 9740 ||||| |||||| ||||| ||||| |||||||||||||||||||||||||||||| |||| Sbjct 22460 CTCTCTCAGCTCGAAAGTCTGATAAAAGTTTCATAGAACACTATTTTTGGAATTTCCAAA 22401 Query 9741 CCGCAATAACTTTTGAATGGA 9761 ||||||||||||||||||||| Sbjct 22400 CCGCAATAACTTTTGAATGGA 22380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 64509780888000