Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2205 590 8e-164 seq1613 104 3e-17 >seq2205 Length=656796 Score = 590 bits (654), Expect = 8e-164 Identities = 1203/1758 (68%), Gaps = 44/1758 (3%) Strand=Plus/Plus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 || || ||||| |||| |||||||||||||||||||| || | |||| | || ||| Sbjct 19221 GCTGGCTTCGTGCGTAAATAGTACATTCCCGTTTTTAAGCCCATTTTCCACGCATAGAAA 19280 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135 || ||| || | ||| |||| | || || || | ||| ||||| | ||||| || Sbjct 19281 TGAATAGATGTCAATTTACCATAATTTGGTTCAGCAACATGAATATTGAAGGATTGGCTC 19340 Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||| || || || || ||||| |||||||||| ||| | || ||| | | |||| Sbjct 19341 TGATCAATAAATGCCCCTCTGTCAGCAGCCATTTGTATTGTTGTTTTTACAGACACTTCC 19400 Query 62196 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGA 62251 || | ||||||||| || || |||| |||||| |||| | || |||| ||||| || Sbjct 19401 CAGACAGTTTTATATAAGTCCCTTA-TATCTTTAGGAATTGCTTCAATATTTTGAATAGA 19459 Query 62252 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62311 |||| || || || ||| || || || |||| |||||| | || ||||| Sbjct 19460 TCCATTATTGTGGATGATAAGATTTTTCATATCTTCATCCCATAAATCAGCTTCAGTTAA 19519 Query 62312 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 62371 | ||| | | ||| ||||||| ||||| ||||| || ||||| |||| | || Sbjct 19520 ATCTCGTAACAAATGATGATTAACAACTTGGAATTCACCTGACAAGACTCGTCTTTGATA 19579 Query 62372 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62431 ||| || ||| | ||||| | || |||||||||||||| ||||||||||| ||||| Sbjct 19580 AATGTTGGAAGTAAATGGTTCAAATGATTCATTATTTCCCAATATTTGAGCAGTGGATGC 19639 Query 62432 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCT 62489 ||| ||||| || || | |||| |||||||||||| ||||| | ||||| ||| Sbjct 19640 AGTTGGCATTGGAGCTAATAATAGGGAATTTCTAAGACC--ATGTTTGGCTATTTTTTCT 19697 Query 62490 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 62549 || || | |||||||||| | || | || ||| | Sbjct 19698 TTGAGTGACACCCAATTCCACAAGTCTGTGGGGGTTTTATTCCACATATCATATTGCAAT 19757 Query 62550 ATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 62608 ||||| | |||||| | || | ||| |||| || || || || | ||||||||||| Sbjct 19758 ATACCTTGACTGGCAGGAC-AGCCTTCATAAGTCTCATAGACGCCATACTTCTCAGCTAA 19816 Query 62609 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 62668 |||||||| || |||| ||| || |||||||| ||||| || || | | ||||| | Sbjct 19817 CTCACAACTGGCTTCTAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAATTT 19876 Query 62669 TTGTGCTTCCAGGCTATCAAATGG-ATAAT--TTAAGAGAATAAACGCGTCCGCTAATCC 62725 |||| || || || | || ||| |||| || ||| || || |||||||| Sbjct 19877 AATTGCTGCCTCACTTTCGTAAGGTATACGCATTAA---AACAAATGCATCAGCTAATCC 19933 Query 62726 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 62785 ||| || ||||| ||||| |||| || ||| |||| ||| ||| || ||||| | || Sbjct 19934 TTGGACTCCAATTCCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCTCTGGCACTGG 19993 Query 62786 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCA-CATCCT 62844 |||||||| | ||| ||||||||||| ||||| |||| || | | | | | |||| Sbjct 19994 GTAATAATTTACATCAATAATTTTATTTAGATT-CTGAGTTATAGTCTTAGTAACTTCCT 20052 Query 62845 TCAGTTTGAGAAAATCAAATC----GCCCATCTATTACAAACATGTTCAAGGCAACAGAT 62900 | | |||| |||| | || | || || | |||||||| || || |||| ||| Sbjct 20053 TTAATTTGGTGAAATTATATGTTTTGTCC-TCATTCACAAACATATTTAAAGCAATTGAT 20111 Query 62901 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 62960 || ||||| || || || || |||| | | |||| || || |||||||| | Sbjct 20112 GCTAGATTGCACACAGCCACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCACAAG 20171 Query 62961 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63020 || || || || ||||| || || || | ||| || || ||| | || || | ||| ||| Sbjct 20172 TTGCTGCATTTAATAGTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCTTTA 20231 Query 63021 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 63080 ||||| ||| ||||||| || ||||||| || | ||| ||||| |||||||| | ||| Sbjct 20232 TAAAGCATGTATGGAGTTCCTGTTTCAACTTGTGCTTCGATAATAGCTTTCCAAAGAACT 20291 Query 63081 CGAGCCTTTATTATAGATTT--GTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTT 63138 |||| | | | | || | | | | ||| |||| ||| |||||| || Sbjct 20292 TGAGCTCTCACTT--GTTTCACGAAGCGACCCTCTTTTTCATATTTCTCATACAAAGCTT 20349 Query 63139 CGAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCATCCGGACACATCAACGAC 63197 | || || || |||||| || | | | | |||||||||||||| || ||||| | | Sbjct 20350 CAAATTCCTCACCCCAA-CAGTCTGCTAGTCCAGGACATTCATGGGGGCACATGATACTC 20408 Query 63198 CACTCTCCGTCAT--CCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254 || ||| | || | ||| |||| |||||| || | ||||| ||||| | ||| ||| Sbjct 20409 CAATCT---TGATTGCTTTCTACTCTTTTCATGAACAAGTCAGGTATCCATAAAGC-ATA 20464 Query 63255 -AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63313 ||||| ||||||| | ||| || || || || |||||||| | ||| ||||| | Sbjct 20465 GAATAGCTCTCTGGCACGGACTTCTTCTTTCCCAGTGTTCTTTTTCAAATCAAGGAATTC 20524 Query 63314 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63373 | ||||||| |||||| ||||| ||||||||||| | | || || | ||| || || Sbjct 20525 AAATATATCAGCATGCCATGGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTTATTACC 20584 Query 63374 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63433 ||| || |||| |||| ||| ||||| || |||||||| ||||| || | | ||| || Sbjct 20585 TCCTTGGTCTACATATCGAGCAGTGTTGTTGTAAACTCTTAACATGGGTACTAGACCATT 20644 Query 63434 TGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGAT 63491 || | |||||| ||||| | ||||| |||| | || | ||| | | || ||| Sbjct 20645 AGAGACACCATTTGTACCAGCTATATAAGTTCCCTTTGCTCTAATGCAGT-GTACATGA- 20702 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 |||||||| || || || ||||| || | || ||| |||||||||||||||| || Sbjct 20703 AGACCTATCCCACCAGCTGACTTAGAAATGAGGGCACATTGTTTTAACGTGTCATAAATT 20762 Query 63552 CCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63611 ||||| ||||||||||| |||| | ||||| || ||| | ||| | || | Sbjct 20763 CCCTCAATGCTATCATCCCTCATTGCTATAAGAAAGCATGAAGATAATTGTGGTCGTGGA 20822 Query 63612 GTTCCCGCATTAAATAAG-GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||| | || | | | ||| || ||| || || ||||| ||||||| || || ||||| Sbjct 20823 GTTGCTGC-TGAGAAAAGAGTTGGACTTGCATGTGTAAAATATTTTTCTGACAGAAGATT 20881 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||| || | ||||| || || || | ||| ||||||| | || ||||| | Sbjct 20882 GTAGGTGTTTATAGCCCCCTCGATGTCTTCTCCATGTATTCCTATAGAAACTCGCATGAG 20941 Query 63731 CATGTGCTGAGGTCTTTC 63748 ||| ||||| || ||||| Sbjct 20942 CATATGCTGTGGCCTTTC 20959 >seq1613 Length=46735 Score = 104 bits (114), Expect = 3e-17 Identities = 158/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||| ||| || || ||| || || | ||| ||||| | || ||||| | Sbjct 40318 CCTCATCTCTAGAAATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCTCGCTTCT 40377 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | |||||| || || || || ||||| ||||| || ||||| || |||||||||| Sbjct 40378 TCATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAATATGCCTTCAACAGCAGCAAAGG 40437 Query 33446 CAATAAGTCTCTCTCCATAACCGGC--GCTGTCATG-TATCCACTTTTGAGCCCAATCGG 33502 |||| | | ||| || | ||| || | || ||||||| | ||||| || | Sbjct 40438 CAATGATACGCTCAGCAAATGTGGCTGACTTGCTTGCAATCCACTGGAGGGCCCAGTCAG 40497 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33545 ||||||| || ||||| |||| ||||| || |||||||| || Sbjct 40498 CCTTCTTCTTCACACAGGGCAGGGTTTCAATAGCATTAAACAG 40540 Score = 86.0 bits (94), Expect = 8e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 ||||| || || |||| || || || || ||||| ||||||||||| ||||| || || Sbjct 40783 TACATCTCAGAGTGAACATTCTCCATAGCAATCTGGAATCCGTAGAAGCATCTGGCTTCT 40842 Query 33655 GTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714 || | || || ||| | || |||||| |||| || ||||| || || || ||| Sbjct 40843 GTCACTTGCACCTCTTGGGAGAAGCGTTCCACCAAGTTCTCATTGACAATGCCATCAGAC 40902 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAA 33746 || ||||| || |||| |||||||| || || Sbjct 40903 GCAGCAAAGAAAGCCAGCACATGTTTGATGAA 40934 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 || |||| ||| ||||| || || ||||| || || ||||||||||| || ||||| | | Sbjct 41418 TTGGATAGATCGACTTCCTCAACGGTCCAGAACGAAGCCTCTGCCTTCTTGTACATTTCC 41477 Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 ||||| ||| ||| || |||||||| || ||||| Sbjct 41478 CAGATATCAGGATACTGTATTGGGAATATTACAAA 41512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622924034151000