Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2898 205 9e-48 seq2205 127 2e-24 seq632 104 2e-17 seq1608 95.1 1e-14 seq806 93.3 4e-14 >seq2898 Length=111689 Score = 205 bits (226), Expect = 9e-48 Identities = 793/1224 (65%), Gaps = 44/1224 (4%) Strand=Plus/Minus Query 62039 AAAGTCGTTGCCGCATATTTTGTCGAATGGGGCGTTTATCCTAGAAACTTTCCTGTAGAT 62098 || || |||| ||| || || |||||||||||||| || || || || || || || || Sbjct 28392 AAGGTTGTTGGCGCTTACTTCGTCGAATGGGGCGTCTACCCCAGGAAGTTCCCCGTCGAC 28333 Query 62099 CGAGTGCCTACTCCTAATCTATCGCATGTTCTCTATGGATTTATTCCTATATGCGGCGGC 62158 || || || | || ||||| | ||| |||| || || || || || || ||||| || Sbjct 28332 CGCGTACCCATCCCGAATCTTACCCATCTTCTGTACGGTTTCATCCCAATCTGCGGTGGA 28273 Query 62159 GACGGCATTAACGACAGTCTCAAGACCATAACCGGTAGTTTTGAAGCTCTTCAGCGGTCG 62218 || ||||| ||||||||| | || || || || || ||||||| || || || Sbjct 28272 GATGGCATCAACGACAGTTTGAAAGAAATCGAAGGCAGCTTCCAAGCTCTGCAACGATCC 28213 Query 62219 TGTTCGGGTCGAGACGACTTTAAAGTGTCGATTCATGACCCGTGGGCTGCCGTCCAGAAA 62278 || || | || ||||| ||||| |||||||| ||||| ||||| || | |||||| Sbjct 28212 TGCAGTGGCAGGGAGGACTTCAAAGTATCGATTCACGACCCTTGGGCAGCTCTTCAGAAA 28153 Query 62279 CCACAAAAACAAGTAACCGCTTGGAACGAACCATACAAAGGTAATTTTGGTCAATTGATG 62338 |||||||| | | | ||||||||||| ||||| |||||||| || || ||||| Sbjct 28152 CCACAAAAGGGTCTGGCGTCCTGGAACGAACCCTACAAGGGTAATTTCGGACAGCTGATG 28093 Query 62339 GCAGCCAAACTGGCGAATCCTCACATTAAAGTGTTACCTTCGATAGGCGGCTGGACATTA 62398 |||| ||| | ||| || | || | |||||||| | || || ||||| | Sbjct 28092 ATGTTGAAACAGGCAAGACCTGACCTGAAGATCTTACCTTCCGTTGGTGGTTGGACCCTG 28033 Query 62399 TCCGATCCGTTCTTTTATTTTCAC-GATGTGGCCAAACGCAAGATTTTTGTCGATTCCGT 62457 | ||||| ||||| | | ||||| || || || | ||| || || || || || Sbjct 28032 GCTGATCCATTCTTCT-TCTTCACTGACAAGGTTAAGAGGAAGCGCTTCGTTGACTCTGT 27974 Query 62458 CATAGAATTTTTACAGACCTGGAAATTTTTCGATGGTGTCGACATCGATTGGGAGTTTCC 62517 | || || | | ||||||||||| || ||||| || ||||| || |||||||| || Sbjct 27973 GAAGGACTTCCTTGAAACCTGGAAATTCTTTGATGGAGTGGACATTGACTGGGAGTTCCC 27914 Query 62518 CGGCGGGAAAGGCGCCAATCCCAACGTAGGCGACGTCGAACGCGATCGCGAAACGTAC-A 62576 || || || ||||| || || | | || | || || || | | ||| Sbjct 27913 TGGTGGTAAGGGCGCTAACCCTGATCTCGGTAGCCCTGATGACGGTC---ACATCTACGT 27857 Query 62577 CGATTCTGTTGAGAGATTTACGCGAAGCCCT---CGA-CCGTCTCTCAATCGAAACGAAT 62632 ||| ||| ||| || | | || || ||| | |||| ||| || ||| Sbjct 27856 CGA-GCTGATGAAGGAACTGAGAGAGATGCTTAACGAGCTGTCTGCCAA--GACTGGAA- 27801 Query 62633 CGAACGTACGAATTGACTAGCGCGATCAGCGCCGGCGATGACAAAATTGCCGTAGTCGAT 62692 ||| |||||| ||||| || |||||| | || ||||| ||| ||||| || Sbjct 27800 AGAA-ATACGAACTGACTTCAGCCATCAGCTCTGGTTGGGACAAGATTCAGGTAGTAGAC 27742 Query 62693 TACACTGAAGCGCAAAAATATTTGGATTATAtttttttAATGACATACGATTTCAAAGGA 62752 |||| | || || | || |||| | || || || |||| ||||| ||||| ||| Sbjct 27741 TACAAAGCGGCTCAGCAGTACATGGACCACATCTTCTTGATGAGCTACGACTTCAAGGGA 27682 Query 62753 GCTTGGTCGAATAGCGATTTGGGATATCAAACGACTCTGTACGCGCCTTCGTTTAACCCT 62812 |||||||| || | | | || | ||| | | ||| |||| || | | ||||| Sbjct 27681 GCTTGGTCAAACGACACTCTTGGCCACCAAGCTGCCCTGCACGCTCCCGCCTGGAACCCC 27622 Query 62813 AAAGAGCATTATACGACCGATTT---TGCC--GTTCGTGCTATGCTCAAGCAAAAAGTCG 62867 || ||| ||| || || || || || | ||| || | ||||| | |||| Sbjct 27621 AAGGAGACTTACACAACTGACTTCGGTGTCAAATTCCTG-TTGGCTCAGG----GAGTCA 27567 Query 62868 AAAACAAAAAGATTATAGTCGGCGTGGCCATGTACGGTCGAGGTTGGACCGGCGT---CG 62924 || || ||| | || || || || |||||||| || |||||||| || || || Sbjct 27566 GCCCTAAGAAAATTGTCGTTGGTGTAGCTATGTACGGCCGTGGTTGGACTGGAGTCAACG 27507 Query 62925 GTGACTTTGTCGACGAAAATAATCCATTTTCCGGCACGGCTAAGGGACCGATCAAAGGTA 62984 || || | || || || ||||| | || || | || ||| ||||||||| Sbjct 27506 GTTACAAAGACG--GA----AACCCATTCACTGGTGTAGCCACTGGCCCGGTCAAAGGTA 27453 Query 62985 CCTGGGAGGACGGAGTCGTCGATTATAGAGAGATTTTTAATTCTTTTGTGGGTAAAGAC- 63043 ||||| |||| || || || || || |||||||| || || | | ||| | Sbjct 27452 CCTGGCAGGATGGTGTAGTGGACTACAGAGAGATAGCCAACGAAATT---GCTCAAGGCA 27396 Query 63044 ---GGCATTAATCGTTACGATTCCATCGCAAAAGCGGCATACGTCTTTAATAACGCGACC 63100 || | | | | ||| || | || |||| | ||||| |||| || | || Sbjct 27395 AGTGGGAGT-ACCATTATGACAAAGTGGCTCAAGCACCTTACGTATTTAGGAAGGAAACT 27337 Query 63101 GGCGATCTCATAACCTACGACAGTCCTCAG-TCGGTTCTGGATAAAGCAAAATATGTTTT 63159 || || || || || || || | | ||| ||| | || || || |||||||| Sbjct 27336 GGTGACCTAATTACATATGATGATGC-CAGATCGACAATTGAGAAGGCCAAATATGTAAG 27278 Query 63160 GGACTATAATCTGGGTGGTCTGTTCGCGTGGGAGATCGATGCTGACAACGGATTGCTTCT 63219 | | |||| || |||||||||||||| ||||| || ||||| ||||| || | || Sbjct 27277 GAATAATAAGCTAGGTGGTCTGTTCGCTTGGGAAATAGATGCAGACAATGGTGATATACT 27218 Query 63220 AAACGCAATGAACAGCGGTCTCGG 63243 ||| || ||||| | ||||| || Sbjct 27217 AAATGCCATGAATATGGGTCTTGG 27194 >seq2205 Length=656796 Score = 127 bits (140), Expect = 2e-24 Identities = 544/846 (64%), Gaps = 29/846 (3%) Strand=Plus/Plus Query 147114 ACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTTT 147173 || ||||| || || | ||||| || || || || | ||||||||||| ||||||||| Sbjct 19197 ACAGTGAACTGGATAGCATTTGCGGCTGGCTTCGTGCGTAAATAGTACATTCCCGTTTTT 19256 Query 147174 AAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTTA---TAGGTTGGATTG 147230 || ||| ||| ||| | |||| ||||| |||| || |||| || |||| | Sbjct 19257 AAGCCCATTTTCCACGCATAGAAATGAATAGATGTCAA---TTTACCATAATTTGGTTCA 19313 Query 147231 GCCACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCATG 147290 || ||| || ||||| |||||||||||||| || | | || | || || ||||| Sbjct 19314 GCAACATGAATATTGAAGGATTGGCTCTGATCAATAAATGCCCCTCTGTCAGCAGCCATT 19373 Query 147291 TCCAACACTACTTTTTGTTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGATATTGTGT 147350 | | | |||| | |||||| | || || | | || | |||| | Sbjct 19374 TGTATTGTTGTTTTTACAGACACTTCCCAGACAGTTTTATATAAGTCCCTTATATCTTTA 19433 Query 147351 GGAATTTCATCAATATTTTGTACAGATCCGTTGTTTT---TAATAATTTTTATCATGATA 147407 |||||| | ||||||||||| | |||||| || || | | |||| ||| |||| || Sbjct 19434 GGAATTGCTTCAATATTTTGAATAGATCCATTATTGTGGATGATAAGATTTTTCAT-ATC 19492 Query 147408 TCTGTCGAATATACGTTGGTGTCTACGAGTTTA---TCG-ACGAGATGCTGATTGACCAC 147463 | || ||| | | | || |||| | ||| | | ||| ||||| || || Sbjct 19493 TTCATCCCATAAA--TCAGCTTC----AGTTAAATCTCGTAACAAATGATGATTAACAAC 19546 Query 147464 TTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAACGA 147523 ||| | || || |||| |||| || | || | || |||||| || || || || Sbjct 19547 TTGGAATTCACCTGACAAGACTCGTCTTTGATAAATGTTGGAAGTAAATGGTTCAAATGA 19606 Query 147524 CTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTAAGCAATCAATAATGA 147583 || || || || | || || ||||| | ||| || ||||| ||| | |||| || Sbjct 19607 TTCATTATTTCCCAATATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTAATAATAGGGA 19666 Query 147584 ATTGCGTAAG-CCGTGCATAGCCATTTCTCGCTTAAGCTCGTCCCAGTTCCAAAGATCAT 147642 ||| | |||| || || | || |||| | || || |||| ||||| | || Sbjct 19667 ATTTC-TAAGACCATGTTTGGCTATTTTTTCTTTGAGTGACACCCAATTCCACAAGTCTG 19725 Query 147643 TCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAACTTGCAGGGCTTCCAT 147702 | | |||| ||||||||| |||| | || || | || ||| ||||| | || | Sbjct 19726 TGGG--GGTTT-TATTCCACATATCATATTGCAATATACCTTGACTGGCAGGACAGCCTT 19782 Query 147703 CGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTTTGACTT--AGTGCACC 147760 | |||| || || || | | | ||||| || ||| | ||| ||||| || Sbjct 19783 CATAAGTCTCATAGACGCCATACTTCTCAGCTAACTCACAACT--GGCTTCTAGTGCCCC 19840 Query 147761 ATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCTCTTGGCTGTCGTAGGG 147820 ||||||||| ||||| | || | || |||||| | | || | | || ||||| || Sbjct 19841 ATAATAAATTGTTTCAAATATTTGTTGATTTAATTTAATTGCTGCCTCACTTTCGTAAGG 19900 Query 147821 CATATCCAAAATGGCGAACGTATCCGCAAGTCCTTGAATACCGATACCGATGGGTCGGTG 147880 ||| || | | || | ||| || | |||||| | || || |||||||||||||| Sbjct 19901 TATACGCATTAAAACAAATGCATCAGCTAATCCTTGGACTCCAATTCCGATGGGTCGGTG 19960 Query 147881 TCTGAAATTCGATGCTTGAGCGCTAGCCAACGGATAAAAATTCAAGTCGATAATTTTATT 147940 || | ||| || || || | || || ||| |||| | || ||||||||||| Sbjct 19961 CCTCATATTTGAGTTTTTTGCCTCTGGCACTGGGTAATAATTTACATCAATAATTTTATT 20020 Query 147941 GAGATT 147946 ||||| Sbjct 20021 TAGATT 20026 >seq632 Length=94143 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 71672 ACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCAC 71731 || ||||| || || ||||| |||| ||| |||||| || || || || || ||| Sbjct 11064 ACACATGACGACCTGTGGAACTCTGCACAGATACAGCTGGTGAAGGAAGGCAAGATGCAC 11005 Query 71732 GGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAG 71791 || | || || ||||||||||| || |||||||| || ||||| | | || ||| | Sbjct 11004 GGCTTTCTGCGGATGTACTGGGCTAAGAAGATTCTGGAATGGACACCTTCGCCTGAGGAC 10945 Query 71792 GCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAAC 71851 |||||| ||||| | || || | || ||| ||||| | || ||||||||||| | Sbjct 10944 GCGCTCAAGTATGCCATATACTTGAATGATCATTACAGCATTGATGGTCGCGATCCCAGT 10885 Query 71852 GGTTATGTCGGT 71863 |||||||| ||| Sbjct 10884 GGTTATGTTGGT 10873 >seq1608 Length=32450 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| | ||||| || | || ||| ||||| | || | Sbjct 29620 ATGCAGATTTTCGTTAAAACGCTTACTGGTAAGACAATTACCCTCGAAGTCGAGCCTTCA 29679 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || |||||| | || || ||| ||| ||||||||||| || || || || || Sbjct 29680 GATACTATCGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGTATCCCACCAGACCAG 29739 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| || || | | |||||| || || ||||||| | | | || ||||| ||| Sbjct 29740 CAAAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAAC 29799 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| ||||| || | || ||||||||| | || |||| || Sbjct 29800 ATTCAAAAGGAATCCACCCTTCACCTGGTCCTGCGTCTGCGAGGTGG 29846 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 || |||||| | ||||| ||||| || || || ||| | |||||| | ||| | || | Sbjct 29388 CATAATGCAGATTTTTGTGAAAACCTTGACGGGTAAAACTATCACCCTTGAAGTTGAGCC 29447 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | |||||| || || | || ||| || ||| ||||||||||| || || || || Sbjct 29448 ATCCGACACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGA 29507 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAAC-GTCAGCGAC 26942 ||| || |||| || | || || || || | ||||| | | | | || ||| ||| Sbjct 29508 TCAGCAGCGACTGATCTTCGCTGGAAAGCAGTTAGAAGACGGTCGCACACTGTC--TGAC 29565 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || ||||| |||||||||||||| | || || || ||| Sbjct 29566 TACAACATCCAAAAAGAATCTACGCTTCACCTTGTTCTG 29604 >seq806 Length=81131 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| |||||||| ||| | || || | ||| | ||| | Sbjct 46098 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTCT 46039 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| || ||| |||||||| || || || || |||||| Sbjct 46038 GACACAATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAGGGAATTCCACCAGATCAA 45979 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| || || || || || ||||| | | | | ||| || || Sbjct 45978 CAAAGATTGATTTTCGCTGGTAAGCAGCTTGAAGACGGACGCACTCTTTCCGATTACAAT 45919 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||| ||||| || | ||| | || || || | ||||| |||| Sbjct 45918 ATTCAAAAGGAATCAACACTTCATTTAGTTCTAAGGTTGAGAGGTGGAA 45870 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26764 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAAT 26823 |||| ||||| | ||||| || || || || || ||| | || || | || | ||| Sbjct 48869 ACAACATGCAGATCTTTGTGAAGACTTTGACGGGGAAAACCATAACATTAGAGGTGGAAC 48810 Query 26824 CAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCG 26883 | || ||||| || | || ||| ||| ||| || || ||||| || ||||||| Sbjct 48809 CCTCTGATACCATTGAAAACGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCTCCCG 48750 Query 26884 ATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACT 26943 ||||||| ||| | || | || ||| |||||| | ||||||| | | | ||||| Sbjct 48749 ATCAACAGAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGACGCACTCTTTCCGACT 48690 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | || || || || || |||||| | ||||| || ||| | || ||||| || Sbjct 48689 ACAATATCCAGAAGGAGTCTACTCTTCATCTCGTGCTGCGTCTCAGAGGTGG 48638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478644599742000