Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2898 176 4e-39 seq2205 123 2e-23 seq1608 100 2e-16 seq806 86.0 5e-12 >seq2898 Length=111689 Score = 176 bits (194), Expect = 4e-39 Identities = 637/983 (65%), Gaps = 24/983 (2%) Strand=Plus/Minus Query 55824 GTTGCCGCATATTTTGTCGAGTGGGGTGTTTATCATAGAAACTTTCCTGTCACTCGAGTT 55883 |||| ||| || || ||||| ||||| || || | || || || || ||| || || Sbjct 28386 GTTGGCGCTTACTTCGTCGAATGGGGCGTCTACCCCAGGAAGTTCCCCGTCGACCGCGTA 28327 Query 55884 CCCACTCCTAATCTGTCACACATTCTCTACGGATTCATACCGATATGCGGCGGCGACGGC 55943 |||| || ||||| | || |||| ||||| ||||| || || ||||| || || ||| Sbjct 28326 CCCATCCCGAATCTTACCCATCTTCTGTACGGTTTCATCCCAATCTGCGGTGGAGATGGC 28267 Query 55944 ATTAACGACAGTCTCAAGACGATAACCGGTAGTTTTGAAGCGCTTCAGCGATCGTGTTCG 56003 || ||||||||| | || || || || || |||| || || ||||| || Sbjct 28266 ATCAACGACAGTTTGAAAGAAATCGAAGGCAGCTTCCAAGCTCTGCAACGATCCTGCAGT 28207 Query 56004 GGTCGAGACGACTTCAAAGTGTCGATTCATGACCCGTGGGCTGCGGTCCAAAAGCCCCAA 56063 || | || ||||||||||| |||||||| ||||| ||||| || | || || || ||| Sbjct 28206 GGCAGGGAGGACTTCAAAGTATCGATTCACGACCCTTGGGCAGCTCTTCAGAAACCACAA 28147 Query 56064 AAACAAGTGACCGCATGGAACGAACCATACAAAGGCAACTTTGGACAATTGATGGCAGCT 56123 || || | | ||||||||||| ||||| || || || ||||| ||||| Sbjct 28146 AAGGGTCTGGCGTCCTGGAACGAACCCTACAAGGGTAATTTCGGACAGCTGATGATGTTG 28087 Query 56124 AAACTGGCGAATCCCCATGTTAAAGTGCTGCCTTCGATCGGTGGCTGGACTTTATCCGAT 56183 |||| ||| | || | | || | | ||||| | ||||| ||||| | | ||| Sbjct 28086 AAACAGGCAAGACCTGACCTGAAGATCTTACCTTCCGTTGGTGGTTGGACCCTGGCTGAT 28027 Query 56184 CCGTTCTTTTACTTTCAC-GATGCGGTCAAACGCAAAATTTTTGTCGATTCTGTCGTCGA 56242 || ||||| | | ||||| || ||| || | || || || || ||||| || Sbjct 28026 CCATTCTTCTTC-TTCACTGACAAGGTTAAGAGGAAGCGCTTCGTTGACTCTGTGAAGGA 27968 Query 56243 GTTTTTACAGACCTGGAAATTTTTCGATGGTGTCGACATCGACTGGGAGTTTCCCGGCGG 56302 || | | ||||||||||| || ||||| || ||||| ||||||||||| || || || Sbjct 27967 CTTCCTTGAAACCTGGAAATTCTTTGATGGAGTGGACATTGACTGGGAGTTCCCTGGTGG 27908 Query 56303 AAAGGGGGCCAATTCCAACGTCGGCGATGCCGAACGCGATCGCAAC-ACGT--ACACGAT 56359 ||||| || || | | |||| | || || || || | |||| | ||| Sbjct 27907 TAAGGGCGCTAACCCTGATCTCGGTAGCCCTGATGACGGTCACATCTACGTCGAGCTGAT 27848 Query 56360 TCTGTTAC---GAGATTTACGCGAAGCGCTAGACCGACTAAGCCTCGAAACGAATCGAAC 56416 | || |||| | | | | ||| | | | | ||| || |||| ||| Sbjct 27847 GAAGGAACTGAGAGAGATGCTTAACGAGCT-GTCTG-CCAAGACTGGAAA-GAA------ 27797 Query 56417 ATACGAGCTAACCAGCGCCATTAGCGCCGGCGATGACAAAATCACGGTCGTCGACTACAC 56476 |||||| || || ||||| ||| | || ||||| || ||| || ||||||| Sbjct 27796 ATACGAACTGACTTCAGCCATCAGCTCTGGTTGGGACAAGATTCAGGTAGTAGACTACAA 27737 Query 56477 AGCCGCTCAAAAATATTTAGATTATAtttttttGATGACATACGATTTTAAAGGCGCTTG 56536 ||| ||||| | || | || | || || ||||||| ||||| || || || ||||| Sbjct 27736 AGCGGCTCAGCAGTACATGGACCACATCTTCTTGATGAGCTACGACTTCAAGGGAGCTTG 27677 Query 56537 GTCGAATAGCGATCTGGGCTATCAGACGACTTTGTACGCGCCTGCGTTTAATCCTAAAGA 56596 ||| || | ||| ||| | || | | || |||| || || | || || || || Sbjct 27676 GTCAAACGACACTCTTGGCCACCAAGCTGCCCTGCACGCTCCCGCCTGGAACCCCAAGGA 27617 Query 56597 ACACTATACGACCGATTTTGCGGT-TCGTGCT-CTGCTTAAACAAAAAGTCGAGAATAAA 56654 || || || || || |||| || | ||| | || |||| ||| Sbjct 27616 GACTTACACAACTGACTT--CGGTGTCAAATTCCTGTTGGCTCAGGGAGTCAGCCCTAAG 27559 Query 56655 AAGATTGTAGTCGGCGTAGCTATGTACGGTCGCGGGTGGACCGGCGTCGGTGATTTCGTC 56714 || ||||| || || |||||||||||||| || || ||||| || ||| | || | Sbjct 27558 AAAATTGTCGTTGGTGTAGCTATGTACGGCCGTGGTTGGACTGGAGTCAACGGTTACAAA 27499 Query 56715 GACAAAAACAATCCATTTTCCGGCACGGCCAAGGGACCTGTCAAAGGTACCTGGGAAGAC 56774 ||| |||| ||||| | || |||| || || ||||||||||||||| | || Sbjct 27498 GACGGAAAC---CCATTCACTGGTGTAGCCACTGGCCCGGTCAAAGGTACCTGGCAGGAT 27442 Query 56775 GGAGTCGTTGATTTTAGAGAAAT 56797 || || || || | ||||| || Sbjct 27441 GGTGTAGTGGACTACAGAGAGAT 27419 >seq2205 Length=656796 Score = 123 bits (136), Expect = 2e-23 Identities = 496/765 (65%), Gaps = 36/765 (5%) Strand=Plus/Plus Query 132199 ATGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAGT 132258 ||| ||||| || | ||| ||||||| || ||||||| || | || | || ||| Sbjct 19532 ATGATGATTAACAACTTGGAATTCACCTGACAAGACTCGTCTTTGATAAATGTTGGAAGT 19591 Query 132259 AAACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCA-TGT 132317 ||| || || || ||||| || ||||||||||||||||| || | ||| || |||| || Sbjct 19592 AAATGGTTCAAATGATTCATTATTTCCCAATATTTGAGCAGTGGATGCAGTTGGCATTGG 19651 Query 132318 AGGCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCC 132377 || ||| |||| ||||| | || || ||| |||| |||| ||| || ||| Sbjct 19652 AGCTAAT-AATAGGGAATTTCTAAGACCATGTTTGGCTATTTTTTCTTTGAGTGACACCC 19710 Query 132378 AGTTCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTAC 132437 | ||||||| || | | | | ||||||||| |||| | || || ||| || Sbjct 19711 AATTCCACAAGTCTGTGG---GGGTTTTATTCCACATATCATATTGCAATATACCTTGAC 19767 Query 132438 TTGCAGGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGT-TCTATGCTC 132496 | |||||| | || | ||||| || || | || | | || || | || | Sbjct 19768 TGGCAGGACAGCCTTCATAAGTCTCATAGACGCCAT---ACTTCTCAGCTAACTCACAAC 19824 Query 132497 TGACT--CAGGGCACCATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTT 132554 || || || || ||||||||||| || || | |||| | ||| |||| ||||| Sbjct 19825 TGGCTTCTAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTAATTGCTG 19884 Query 132555 GTTGACTGTCGTAGGGCAAA---TTTAAAATAGCGAACGCATCGGCAAGTCCCTGAATGC 132611 | ||| ||||| || | | |||||| | || ||||| || | ||| || | | Sbjct 19885 CCTCACTTTCGTAAGGTATACGCATTAAAA---CAAATGCATCAGCTAATCCTTGGACTC 19941 Query 132612 CGATACCGATGGGTCTATGTTTAAAATTCGATACTTGTGCGCTAGTCAGCGGATAAAAGT 132671 | || |||||||||| || | | ||| || || ||| | || || ||| | | Sbjct 19942 CAATTCCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCTCTGGCACTGGGTAATAAT 20001 Query 132672 TTTTGTCTATTATTTTATTGAGATTGTTAGTGACAACTCTAGCCACTTTATATAGCGAT- 132730 || || || |||||||| ||||| | ||| | | ||| |||| | || || Sbjct 20002 TTACATCAATAATTTTATTTAGATTCTGAGTTATAGTCTTAGTAACTTCCTTTA---ATT 20058 Query 132731 ---TCAAAGTCAAAGTTTTTAGTCCTTTTGTTGGCAAAACAATTGACGGCAATCGAGGCC 132787 | ||| | | ||||| |||| | || |||| ||| | ||||| || || Sbjct 20059 TGGTGAAATTATATGTTTT--GTCC--TCATTCACAAACATATTTAAAGCAATTGATGCT 20114 Query 132788 AAATTGCATACGGCTGTCTCTT--TATTAT-CGCTATACTGTACGATTTCTGCACACAAA 132844 | |||||| || || | ||| | | || | | || | ||| ||||| | ||||| Sbjct 20115 AGATTGCACACAGC---CACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCACAAG 20171 Query 132845 TTACTGTTTCGAATAACTCCCAAGtttttttGATTG-TTTTTCTCGTTTACGTTATCTTT 132903 || ||| | |||| |||||||| ||||| ||| ||||||| | | | |||||| Sbjct 20172 TTGCTGCATTTAATAGTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATG-AATCTTT 20230 Query 132904 ATGCAACATGTACGGACCTCCGGTTTCGACCTGAATTTCGATAAT 132948 || | |||||| ||| ||| ||||| || || ||||||||| Sbjct 20231 ATAAAGCATGTATGGAGTTCCTGTTTCAACTTGTGCTTCGATAAT 20275 >seq1608 Length=32450 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | ||||| || | |||||| ||||||||||| | Sbjct 29620 ATGCAGATTTTCGTTAAAACGCTTACTGGTAAGACAATTACCCTCGAAGTCGAGCCTTCA 29679 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || |||||| | || || ||| ||| ||||||||||| || || || || || Sbjct 29680 GATACTATCGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGTATCCCACCAGACCAG 29739 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || ||||| | | ||||||||| || ||||||| | | | || || || ||| Sbjct 29740 CAAAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAAC 29799 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 |||||||| ||||| || |||| Sbjct 29800 ATTCAAAAGGAATCCACCCTTCA 29822 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || |||||| | ||||| ||||| || || || ||| | || ||| | ||||| ||| | Sbjct 29388 CATAATGCAGATTTTTGTGAAAACCTTGACGGGTAAAACTATCACCCTTGAAGTTGAGCC 29447 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 |||||| || || | || ||| || ||| |||||||||||||| || || || Sbjct 29448 ATCCGACACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGA 29507 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGAAAC-GTCAGCGAT 24164 ||| ||| ||||||| | || || ||||| | ||||| | | | || ||| || Sbjct 29508 TCAGCAGCGACTGATCTTCGCTGGAAAGCAGTTAGAAGACGGTCGCACACTGTC--TGAC 29565 Query 24165 TATAACATTCAAAAAGAATCTACAATTCA 24193 || ||||| |||||||||||||| |||| Sbjct 29566 TACAACATCCAAAAAGAATCTACGCTTCA 29594 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||||| ||||||||| | || || | ||||| ||| | Sbjct 29848 ATGCAGATTTTCGTGAAGACATTGACTGGAAAAACCATCACTCTTGAAGTTGAGCCTTCT 29907 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | || || ||||| || || || || || || || || || Sbjct 29908 GACACTATTGAGAATGTAAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAG 29967 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| || ||||||| | | | | ||| |||||| Sbjct 29968 CAGCGTCTAATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGTACCCTTTCCGACTATAAC 30027 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||| || |||||||| |||| || || || Sbjct 30028 ATTCAGAAGGAATCTACCCTTCACTTGGTCTT 30059 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || ||||| ||||| ||||||||| | || ||| | ||||| ||| | | Sbjct 30304 ATGCAGATTTTCGTAAAGACATTGACTGGAAAAACTATCACCCTTGAAGTGGAGCCTTCC 30363 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || || || || ||||| ||||| || || || || || Sbjct 30364 GATACCATTGAAAACGTAAAGGCTAAAATCCAAGACAAGGAAGGAATTCCCCCTGACCAG 30423 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | |||||||| || ||||||| | | | ||| |||||| Sbjct 30424 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACTCTTTCCGACTATAAC 30483 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||| || |||||||| |||| || || || Sbjct 30484 ATTCAGAAGGAATCTACCCTTCACTTGGTCTT 30515 >seq806 Length=81131 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23986 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGG 24045 |||| ||||| | ||||| || || || || || ||| | || || | || || || Sbjct 48869 ACAACATGCAGATCTTTGTGAAGACTTTGACGGGGAAAACCATAACATTAGAGGTGGAAC 48810 Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 || || ||||| || | || ||| ||| ||| || || |||||||| ||||||| Sbjct 48809 CCTCTGATACCATTGAAAACGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCTCCCG 48750 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATT 24165 ||||||||||| |||| | || ||| || ||| | ||||||| | | | ||| | Sbjct 48749 ATCAACAGAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGACGCACTCTTTCCGACT 48690 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 | || || || || || ||||| ||||| | ||| Sbjct 48689 ACAATATCCAGAAGGAGTCTACTCTTCATCTCGTG 48655 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || ||||||||||| ||||| ||| | || || | || || ||| | Sbjct 48636 ATGCAAATTTTCGTAAAAACATTGACTGGCAAAACCATCACTTTAGAGGTTGAGCCTTCT 48577 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || ||| || || || || || || || || || ||||| Sbjct 48576 GACACAATCGAAAATGTTAAAGCCAAAATCCAGGATAAGGAGGGTATCCCACCTGATCAG 48517 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || || |||| | | |||||| || | ||||||| | || | | | || || || Sbjct 48516 CAACGATTGATCTTTGCCGGCAAACAGTTGGAAGATG-GACGCACATTATCAGACTACAA 48458 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || |||||||||||||| |||| ||||| || | ||| | |||||| Sbjct 48457 TATCCAAAAAGAATCTACCCTTCACTTAGTATTGCGTTTGCGCGGAGGA 48409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429920411461125